BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC01RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig827 1078 0.0
>3x_Contig827
Length = 2924
Score = 1078 bits (544), Expect = 0.0
Identities = 633/655 (96%), Gaps = 6/655 (0%)
Strand = Plus / Minus
Query: 56 tggatatcaagtctccaatacaaaggaaacagctgaaggcactgaccacttgaaagactg 115
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1972 tggatatcaagtatccaatacaaaggaaacaactgaaggcactgaccacttgaaagactg 1913
Query: 116 tgtttagtccgttagtttgtctaaattacttcgaccttcaccccaccaagcattccacaa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 tgtttagtccgttagtttgtctaaattacttcgaccttcaccccaccaagcattccacaa 1853
Query: 176 aaaaaatgtctgttgacttcagctctttggcccaacaattcacagaattctactacaatc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1852 aaaaaatgtctgttgacttcagctctttggcccaacaattcacagaattctactacaatc 1793
Query: 236 aattcgatagtgacagaacccaattgggtaatctgtacagagagcaatcgatgctcactt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 aattcgatagtgacagaacccaattgggtaatctgtacagagagcaatcgatgctcactt 1733
Query: 296 tcgaaactacccagttgcaaggagccaaggatatcgttgagaagctagtctctttgccgt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1732 tcgaaactacccagttgcaaggagccaaggatatcgttgagaagctagtctctttgccgt 1673
Query: 356 tccaaaaagtagctcatcgtatcactactttggacgctcaaccggcttctcctaatggtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 tccaaaaagtagctcatcgtatcactactttggacgctcaaccggcttctcctaatggtg 1613
Query: 416 acgtcttggtcatgatcaccggtgacttgttgatcgatgaagaacaaaacccacaacgtt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 acgtcttggtcatgatcaccggtgacttgttgatcgatgaagaacaaaacccacaacgtt 1553
Query: 476 tctcccaagtgtttcatttgatgccagaaggatcttcatactacgtgtacaacgatatct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 tctcccaagtgtttcatttgatgccagaaggatcttcatactacgtgtacaacgatatct 1493
Query: 536 tccgtctaaactactcggcttaggcctctttgtgtgtgtgtgtgtgggggtgtgtttgta 595
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1492 tccgtctaaactactcggcttaggcctctttgtgtgtgtgtgtgtgtgtgtgtgtttgta 1433
Query: 596 catttattcttgtaa-tatcataccat-taaaac-ttaattat-acgggatatc-aaata 650
||||||| | ||||| |||||||| || |||| | |||||||| ||| |||||| |||||
Sbjct: 1432 catttatacatgtaagtatcatacaatataaatctttaattatcacgtgatatcaaaata 1373
Query: 651 gtggacttttacct-tttaaaacgaattccctttttaaagccatactgnttccga 704
||||||| |||||| | ||||||||| |||| | ||||||||| |||| ||||||
Sbjct: 1372 gtggactcttacctatataaaacgaagtcccctattaaagccagactgtttccga 1318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6732
Number of Sequences: 1807
Number of extensions: 6732
Number of successful extensions: 171
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)