BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC02FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1055 1059 0.0
3x_Contig1605 204 2e-52
3x_Contig1801 200 4e-51
3x_Contig1420 198 1e-50
>3x_Contig1055
Length = 3919
Score = 1059 bits (534), Expect = 0.0
Identities = 590/604 (97%), Gaps = 4/604 (0%)
Strand = Plus / Minus
Query: 88 aacgtttccttgttacaagacaggttgataaagcacatataatgagttaaaggcagtgat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 aacgtttccttgttacaagacaggttgataaagcacatataatgagttaaaggcagtgat 1374
Query: 148 tgggaagtactccgagaatttactagtataaacgaagacacaacagaaactaaagggaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 tgggaagtactccgagaatttactagtataaacgaagacacaacagaaactaaagggaaa 1314
Query: 208 ctgaaggaaataacatgtattttgccagcaatatcaagttctacgctgtttatcagattc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 ctgaaggaaataacatgtattttgccagcaatatcaagttctacgctgtttatcagattc 1254
Query: 268 atgcagatcttcattactaatgtgacatactttaatcacgattagggtttcgttgaagaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 atgcagatcttcattactaatgtgacatactttaatcacgattagggtttcgttgaagaa 1194
Query: 328 caaaagttggatccggcg-agtcacgtgactgcatcacgtgactgttaatatacgagata 386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 caaaagttggatccggcgaagtcacgtgactgcatcacgtgactgttaatatacgagata 1134
Query: 387 gggaagtacaaatagaagagaagaatcaatcttatgccaactcatgggatgattaggcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 gggaagtacaaatagaagagaagaatcaatcttatgccaactcatgggatgattaggcat 1074
Query: 447 catataatggaaaggcgatgatggagagagaacgagcaatactcaccatacaacggtgta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 catataatggaaaggcgatgatggagagagaacgagcaatactcaccatacaacggtgta 1014
Query: 507 ataataaatagtcaactgatgtcagatacagataatatgattgaattacgctggctaaac 566
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 1013 ataataaatagtcaactgatgtcagatacagataatatgagtgagtaacgctggctaaac 954
Query: 567 agactnctggcacaacaaatcctgtaaggtataatat-atatgggagtcacttttccata 625
||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||
Sbjct: 953 agactcctggcacaacaaatcctgtaaggtataatataatatggtagtcactttcccata 894
Query: 626 tgtttcatag-gaaacaacggttggatttgtttctttttg-aactgacaattncttaccc 683
|||||||||| |||||||||||||||| |||||| | ||| ||||||||||| |||||||
Sbjct: 893 tgtttcatagtgaaacaacggttggatctgtttcatcttgaaactgacaattccttaccc 834
Query: 684 tact 687
||||
Sbjct: 833 tact 830
>3x_Contig1605
Length = 12373
Score = 204 bits (103), Expect = 2e-52
Identities = 159/173 (91%), Gaps = 6/173 (3%)
Strand = Plus / Minus
Query: 375 atatacgagatagggaagtacaaatagaagagaagaatcaatcttatgccaactcatggg 434
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 567 atatacgagatagagaagtacaaatagaagagaagaatcaatcttatgccaactcatagg 508
Query: 435 atgattaggcatcatataatggaaaggcgatgatgg-agagagaacgagcaatactcacc 493
|| ||||||||| |||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 507 ataattaggcattatataatgtaaa---gatgatggtagagagaacgagcaatactcacc 451
Query: 494 atacaacggtgtaataataaatagtcaactgatgtcagatacagataatatga 546
| |||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 450 acacaacggtgt-ataat-attagtcaattgatgtcagatacagataatatga 400
>3x_Contig1801
Length = 57606
Score = 200 bits (101), Expect = 4e-51
Identities = 156/172 (90%), Gaps = 3/172 (1%)
Strand = Plus / Plus
Query: 375 atatacgagatagggaagtacaaatagaagagaagaatcaatcttatgccaactcatggg 434
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 51071 atatacgagatagagaagtacaaatagaagagaagaatcaatcttatgccaactcatagg 51130
Query: 435 atgattaggcatcatataatggaaaggcgatgatggagagagaacgagcaatactcacca 494
|||||||||||| ||||||||||||| |||| ||| ||||| ||| ||||| ||||
Sbjct: 51131 atgattaggcattatataatggaaagatgatggtggggagag--ggaggaatacagacca 51188
Query: 495 tacaacggtgtaataataaatagtcaactgatgtcagatacagataatatga 546
|||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 51189 cacaacggtgt-ataataaatagtcaattgatgtcagatacagataatatga 51239
>3x_Contig1420
Length = 8324
Score = 198 bits (100), Expect = 1e-50
Identities = 155/171 (90%), Gaps = 3/171 (1%)
Strand = Plus / Plus
Query: 376 tatacgagatagggaagtacaaatagaagagaagaatcaatcttatgccaactcatggga 435
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct: 559 tatacgagatagagaagtacaaatagaagagaaaaatcaatcttatgccaactcgtagga 618
Query: 436 tgattaggcatcatataatggaaaggcgatgatggagagagaacgagcaatactcaccat 495
||||||||||| ||||||||||||| |||| ||||| ||| ||||| |||||||||||
Sbjct: 619 tgattaggcattatataatggaaagatgatggtggagggag--cgagcgatactcaccat 676
Query: 496 acaacggtgtaataataaatagtcaactgatgtcagatacagataatatga 546
||||| |||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 677 acaacagtgt-ataatgaatagtcaattgatgtcagatacagataatatga 726
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7153
Number of Sequences: 1807
Number of extensions: 7153
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 4
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)