BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC02RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig662 1590 0.0
>3x_Contig662
Length = 2162
Score = 1590 bits (802), Expect = 0.0
Identities = 847/857 (98%), Gaps = 4/857 (0%)
Strand = Plus / Minus
Query: 48 cttaagaaaattgcaaccttattagaacttaagaaacaagttgataagctaacggctgaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 cttaagaaaattgcaaccttattagaacttaagaaacaagttgataagctaacggctgaa 949
Query: 108 aagcagatagtgaaatagaaccacataaatctatataaggttaagtaactgttacaggct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 aagcagatagtgaaatagaaccacataaatctatataaggttaagtaactgttacaggct 889
Query: 168 aaaaatttacgtagttattaggaattcattcgagatcatagtcatgtaatcgatgtctac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 aaaaatttacgtagttattaggaattcattcgagatcatagtcatgtaatcgatgtctac 829
Query: 228 ggctagaaattctgaactagaaaaagcagccgaaaggtcaaaattgttgaaagaatgttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ggctagaaattctgaactagaaaaagcagccgaaaggtcaaaattgttgaaagaatgttt 769
Query: 288 cgaaaggcaatctgtaaaacgtctttcaaaattcaagtctacaaaagtgcagtcaacaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgaaaggcaatctgtaaaacgtctttcaaaattcaagtctacaaaagtgcagtcaacaga 709
Query: 348 ggatgagcgaagagtttcaatgtttggcaaccctgatagttcgttttgaagaaaactctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggatgagcgaagagtttcaatgtttggcaaccctgatagttcgttttgaagaaaactctt 649
Query: 408 gattttacgatgttgggaaaatccaagtgacattcttagtagattatagaaaaatctata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gattttacgatgttgggaaaatccaagtgacattcttagtagattatagaaaaatctata 589
Query: 468 atattgacgcatgggtgctttcatttcatgcaacgtcaattgctgactgcaaaagtgtat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atattgacgcatgggtgctttcatttcatgcaacgtcaattgctgactgcaaaagtgtat 529
Query: 528 gttggaggaaatagaataaacaagcccgataaaggattctgtgcgagcttcagaaggcct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttggaggaaatagaataaacaagcccgataaaggattctgtgcgagcttcagaaggcct 469
Query: 588 caaaggtgatgactcgattctgtcattaagaagttcgagaaatatgacacaaacaatcag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaaggtgatgactcgattctgtcattaagaagttcgagaaatatgacacaaacaatcag 409
Query: 648 cagaggaggaagttggatatctgggctcttcagcggaagctcggaaagtacagtactgaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cagaggaggaagttggatatctgggctcttcagcggaagctcggaaagtacagtactgaa 349
Query: 708 agttcgaatgtcatcatcgaaacatttatctttaacagcttttttcattgtttccattag 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agttcgaatgtcatcatcgaaacatttatctttaacagcttttttcattgtttccattag 289
Query: 768 cgaaggtatatncatattattctctaatggtgacagcactcttttcacaagatataataa 827
||| | ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 288 cgaggttatattcatattattctctaatgttgacagcactctttcaacaagatataataa 229
Query: 828 tctatcattgtccgatggtaatcctcg-aga-attccctt-atgcagagttctcag-ttc 883
||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||
Sbjct: 228 tctatcattgtccgatggtaatcctcgaagatattcccttaatgcagagttctcagtttc 169
Query: 884 ctcatcattgatgtgaa 900
|||||||||||||||||
Sbjct: 168 ctcatcattgatgtgaa 152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6841
Number of Sequences: 1807
Number of extensions: 6841
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)