BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 151 3e-36
>3x_Contig995
Length = 2553
Score = 151 bits (76), Expect = 3e-36
Identities = 163/184 (88%), Gaps = 6/184 (3%)
Strand = Plus / Minus
Query: 524 aataattgtactcgttttccagatacagggaatctattgtagaatt-tctctgaatctga 582
||||||||||||| ||||||| |||||||||||||||| || |||| ||| | |||||||
Sbjct: 2395 aataattgtactctttttccatatacagggaatctattttataattctct-ttaatctga 2337
Query: 583 tttc-actccgaaatgaagcttgatttagt-aaagttccctggaattgttttattgaatt 640
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 2336 tttcaactccgaaatgaagcttgatttagtaaaagttccctggaattgttttatagaatc 2277
Query: 641 cga-actggccatgcattggcaaaccc-ttgattttgcaagcgaccatattcattccatt 698
||| |||| | |||||| ||||||||| | ||| |||| |||||||||| |||| |||||
Sbjct: 2276 cgacactgccaatgcatcggcaaacccatagatattgcgagcgaccatagtcataccatt 2217
Query: 699 gaaa 702
||||
Sbjct: 2216 gaaa 2213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8563
Number of Sequences: 1807
Number of extensions: 8563
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)