BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC03RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1671 0.0
>3x_Contig1509
Length = 8584
Score = 1671 bits (843), Expect = 0.0
Identities = 909/924 (98%), Gaps = 7/924 (0%)
Strand = Plus / Minus
Query: 45 cttgaatcttagagtcttcagcttcaacaccaacggcttcaagaacgttcttgatttcag 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6738 cttgaatcttagagtcttcagcttcaacaccaacggcttcaagaacgttcttgatttcag 6679
Query: 105 tagcggatggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtacttca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6678 tagcggatggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtacttca 6619
Query: 165 tttctggtccggttttattttgaaataatcgatttaagcaagaagcagactattccttgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6618 tttctggtccggttttattttgaaataatcgatttaagcaagaagcagactattccttgg 6559
Query: 225 tctattaggaaatatgataataaataaataacaaaccagaaagaacaagaaacaaagaga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6558 tctattaggaaatatgataataaataaataacaaaccagaaagaacaagaaacaaagaga 6499
Query: 285 ggtttaagtatataataaatattcgaattatatagccttgtattaagttgaacaagtttt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6498 ggtttaagtatataataaatattcgaattatatagccttgtattaagttgaacaagtttt 6439
Query: 345 aaactcttctcatctctatttttttttcttcaatttcatccaagaaactttgcatcatcg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6438 aaactcttctcatctctatttttttttcttcaatttcatccaagaaactttgcatcatcg 6379
Query: 405 tgaaaaatttcagactattctttgtaatcatgtacgaccactcgctaattgttggttgtc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6378 tgaaaaatttcagactattctttgtaatcatgtacgaccactcgctaattgttggttgtc 6319
Query: 465 tcatgaaaaaagttactaatcattatacacggaaatacaaccacaacgatatttgaatct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6318 tcatgaaaaaagttactaatcattatacacggaaatacaaccacaacgatatttgaatct 6259
Query: 525 aagagtgccacgtcatatatacatccgggtaacattcgtaaattctgtttcgcattctct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6258 aagagtgccacgtcatatatacatccgggtaacattcgtaaattctgtttcgcattctct 6199
Query: 585 ttctttttggactcttggatcgcacgcagtttccatttagaagatcacaaatatattccg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6198 ttctttttggactcttggatcgcacgcagtttccatttagaagatcacaaatatattccg 6139
Query: 645 cagcagtgatacttgcatatttcatacgtacttgatgcatacgtgaaaaggagcacataa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6138 cagcagtgatacttgcatatttcatacgtacttgatgcatacgtgaaaaggagcacataa 6079
Query: 705 tataaacacaagtaggcatatagtgtatgtatcanatatgtacagatgtgttctgataaa 764
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6078 tataaacacaagtaggcatatagtgtatgtatcaaatatgtacagatgtgttctgataaa 6019
Query: 765 tgacaattattcgagcttagaagaaagntgttatctaaaggcttgtcacttttttgtttg 824
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 6018 tgacaattattcgagcttagaagaaagttgttatctaaaggcttgtcac-tttttgtttg 5960
Query: 825 ggtcgtctggtgaactactgggaacaatcttcaatactgaaatatcattatctatccaat 884
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 5959 ggtcgtctggtgaactactggaaccaatcttcaatactgaaatatcattatctatccaat 5900
Query: 885 aacacangtgaaaggaa--taaaaaaaaaattc-atactatgaga-taaagatgagtctt 940
|||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 5899 aacaca-gtgaaaagaaataaaaaaaaaaattcaatactatgagattaaagatgagtctt 5841
Query: 941 c-atagtgaacgatttttagatat 963
| |||||||||||| | |||||||
Sbjct: 5840 caatagtgaacgatatatagatat 5817
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,457
Number of Sequences: 1807
Number of extensions: 11457
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)