BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC04FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 593 e-169
>3x_Contig1787
Length = 34189
Score = 593 bits (299), Expect = e-169
Identities = 355/369 (96%), Gaps = 5/369 (1%)
Strand = Plus / Minus
Query: 88 ttatattctgtggacgtggtgcgaagctaacaccgttttccaatgttcgtggagacactg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23555 ttatattctgtggacgtggtgcgaagctaacaccgttttccaatgttcgtggagacactg 23496
Query: 148 gtgttcccaaagctctattgccggttgcaaaccgctccatgattgagttcgtactagatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23495 gtgttcccaaagctctattgccggttgcaaaccgctccatgattgagttcgtactagatt 23436
Query: 208 ggtgtgagcatgcccaatttaaagaggtcaatctagttattgacgcatccgatgctgacg 267
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23435 ggtgtgagcaagcccaatttaaagaggtcaatctagttattgacgcatccgatgctgacg 23376
Query: 268 aattagaggaaagtttgaaaaaataccgtgaagtgagagggcatttattttggactgtta 327
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23375 aattagaggaaagtttgaaaaaataccgtgaagtgagagggca-ttattttggactgtta 23317
Query: 328 tcccaaagcgttggatccaaccatgctcacttattttgaaaaacccatttcctattaata 387
||||||||||||||||| ||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 23316 tcccaaagcgttggatcgaaccatgctcact--atttgaaaaa-ccatctnctattaata 23260
Query: 388 ttatacccttcaaaagtgagaatacacgagaaatgtctgaagaatgaattgctagataag 447
||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 23259 ttataccctcaaaatgtgagaatacaggag-aatgtctgaagaatgaattgctagataag 23201
Query: 448 ataactgga 456
|||||||||
Sbjct: 23200 ataactgga 23192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,414
Number of Sequences: 1807
Number of extensions: 17414
Number of successful extensions: 139
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)