BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC05FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1231 0.0
>3x_Contig1647
Length = 14353
Score = 1231 bits (621), Expect = 0.0
Identities = 702/724 (96%), Gaps = 4/724 (0%)
Strand = Plus / Plus
Query: 87 tgatagaaacaatgcagtactcggaatacgctacaaagccagtaatatatcggaaaaaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5954 tgatagaaacaatgcagtactcggaatacgctacaaagccagtaatatatcggaaaaaaa 6013
Query: 147 gaattatccgcaatagccataataaccccaaaggaaaatgaatcaaccattgatcactag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6014 gaattatccgcaatagccataataaccccaaaggaaaatgaatcaaccattgatcactag 6073
Query: 207 cacaatgggcgttggtatttgcatactgagcaccaggcaccggagatcgggtgttaagct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6074 cacaatgggcgttggtatttgcatactgagcaccaggcaccggagatcgggtgttaagct 6133
Query: 267 aacgttggccaccgggcatccgatcccaatctgtattatggtgatatgcatgcaatgcga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6134 aacgttggccaccgggcatccgatcccaatctgtattatggtgatatgcatgcaatgcga 6193
Query: 327 acccaaatcgagcaaaaaaagaaaaaaaaattgagaggacctgcatgaaaagaaataaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6194 acccaaatcgagcaaaaaaagaaaaaaaaattgagaggacctgcatgaaaagaaataaaa 6253
Query: 387 aattccgcgacacacagaaaagtgaaacaaaaagtaactcactctacgagccagcaatat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6254 aattccgcgacacacagaaaagtgaaacaaaaagtaactcactctacgagccagcaatat 6313
Query: 447 gtgttcctgttccaaaaactcaacttttagagtaggaattcagtttctttctctatctag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314 gtgttcctgttccaaaaactcaacttttagagtaggaattcagtttctttctctatctag 6373
Query: 507 tgcgttagagcagctcagagatcaacgagagaaatcagttcagattttgttagagagaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 tgcgttagagcagctcagagatcaacgagagaaatcagttcagattttgttagagagaag 6433
Query: 567 tacggagaaatgtcccttttctttttttatctctaatctggggggac-tcctatgtgctt 625
|||||||||||||||||||||||||||||||||| |||| || | || ||||||||||||
Sbjct: 6434 tacggagaaatgtcccttttctttttttatctct-atcttggtgtacttcctatgtgctt 6492
Query: 626 gngttggtatacgggacgtattgccatttnccagagtatagaccgtttcaaccatccatg 685
| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 6493 g-gttggtatacgggacgtattgccatttcccagagtatagaccgttcaaaccatccatg 6551
Query: 686 gctaccccccccattttggcaactttcgacgtatcgggagatctacagaagtatccctgg 745
|||| |||||||||| ||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 6552 gcta-cccccccattatggcaaccttcgacgtatcggtagatctacagagttatccctga 6610
Query: 746 acatacattttagtatttattcctacatgtattatgccattactgaagctggacactgga 805
|||||||||| ||||| ||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct: 6611 acatacatttaagtatatatacatacatgtattatgccattactgatgctgaacactgga 6670
Query: 806 aaaa 809
||||
Sbjct: 6671 aaaa 6674
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8586
Number of Sequences: 1807
Number of extensions: 8586
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)