BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC05RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1088 1289 0.0
>3x_Contig1088
Length = 4585
Score = 1289 bits (650), Expect = 0.0
Identities = 743/767 (96%), Gaps = 8/767 (1%)
Strand = Plus / Minus
Query: 167 ccaaaggctagccatcataatgccttgggaattctctgagcttaacaagtcataaaatga 226
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 4585 ccaaaggctagccatcataatgccttggga-ttctctgagcttaacaagtcatanaatga 4527
Query: 227 gggtgaagtattagaccatttttgatagtcagtaacaccataagacatgaaaacaccgag 286
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 gggtgaagtattagaccatttntgatagtcagtaacaccataagacatgaaaacaccgag 4467
Query: 287 caatgacccttgatagcataaatttgggtaccaactgatcaaatattggctccaagtgct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4466 caatgacccttgatagcataaatttgggtaccaactgatcaaatattggctccaagtgct 4407
Query: 347 attcttccaggtgaccttgtgaacgttacgctttgctaacaaaaacagagtcttccatga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 attcttccaggtgaccttgtgaacgttacgctttgctaacaaaaacagagtcttccatga 4347
Query: 407 tcttctcttgtaaacagttaaattgtgtttgaaagcatacaaaacatataatgctcctaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 tcttctcttgtaaacagttaaattgtgtttgaaagcatacaaaacatataatgctcctaa 4287
Query: 467 aactagagtcaaataatgaccaacaatccaaattgccctttgcttggctttgatatcaac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4286 aactagagtcaaataatgaccaacaatccaaattgccctttgcttggctttgatatcaac 4227
Query: 527 cttggaatccttcttacggataactttcattgtgtctcttttatttccgtgaataaaaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4226 cttggaatccttcttacggataactttcattgtgtctcttttatttccgtgaataaaaca 4167
Query: 587 gctagtaccaacaatttccaaacaaaagtattgcaaactatttgctcagataaataaatg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4166 gctagtaccaacaatttccaaacaaaagtattgcaaactatttgctcagataaataaatg 4107
Query: 647 gcaattgcaataaacggaagagcttcagcaggtctggaaacaagctatccatcttccaag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4106 gcaattgcaataaacggaagagcttcagcaggtctggaaacaagctatccatcttccaag 4047
Query: 707 tttttaaacccttnatatatttgattgttccgggtgtattttcaacanagcaa-ttttta 765
||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 4046 tttttaaacccttataatatttgattgttccgtgtgtattttcaacaaagcaatttttta 3987
Query: 766 aaacctttctttgcattagatcgaggcgaaagcgaaaat-atgttcgcagctta-ttcat 823
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 3986 aaacctttctttgcattagatcgaggcgaaagcgaaaataatgttcgcagcttatttcat 3927
Query: 824 gtcatctcatcggnattaaaagctgggtaaccttcac-agatgtaattaaa--tattcct 880
||||||||||||| |||||||||||||||| |||||| |||||||| |||| || | |
Sbjct: 3926 gtcatctcatcggtattaaaagctgggtaaacttcacaagatgtaaataaaataatacat 3867
Query: 881 agttagntgctgtaagtcctgagtgagggata-tagtatttgatcaa 926
|| ||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 3866 agatagttgctgtaagtcttgagtgagggatattagtatttgatcaa 3820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6807
Number of Sequences: 1807
Number of extensions: 6807
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)