BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC06FM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1476 722 0.0
>3x_Contig1476
Length = 8689
Score = 722 bits (364), Expect = 0.0
Identities = 494/519 (95%), Gaps = 14/519 (2%)
Strand = Plus / Plus
Query: 87 ctagccgtatttctagtatagtcacaccttttgataatatatatatatatacatatatat 146
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3938 ctagccgtatttctagtatagtcac-ccttttgataatatatatatatatacatatatat 3996
Query: 147 ttaaatatacgtatatctttgatggtatggctattgtttggaactaaaatattggtttac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3997 ttaaatatacgtatatctttgatggtatggctattgtttggaactaaaatattggtttac 4056
Query: 207 gggcctatttcattatctcttatcttggcacaaggttgtaagattaaatttaccataagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4057 gggcctatttcattatctcttatcttggcacaaggttgtaagattaaatttaccataagc 4116
Query: 267 -tttgcactgctgtaagtaggtacaaggac-ccatcaaaagttctttaaa-tgggttagt 323
||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 4117 ttttgcactgctgtaagtaggtacaaggacaccatcaaaagttctttaaattgtgttagt 4176
Query: 324 ttcttcag-gctgctttcgtatttcgtcaccgtatgtgacagccttaagc-atatttgaa 381
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4177 ttcttcagtgctgctttcgtatttcgtcaccgtatgtgacagccttaagcaatatttgaa 4236
Query: 382 ac-ttncaatcaatttct-aggtaaaagaaaag-agaagtttttataagtagtggggtta 438
|| || ||||||| |||| |||||||||||||| |||||| ||||||||||||| |||||
Sbjct: 4237 actttccaatcaaattctaaggtaaaagaaaagaagaagtatttataagtagtgtggtta 4296
Query: 439 atcatcaacgtttttgttttcaaatagcaggagcaaaagttagc-aaagcgagggcttcg 497
|||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||
Sbjct: 4297 atcatcaacgtttttgttttcaaatagcaggagc-aaaggtagcaaaagcgagggctccg 4355
Query: 498 atctattgcatattccgttaaagctgtctatgaacacctgattgctcttttgacgttagc 557
|||||| ||||| ||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct: 4356 atctatcgcata-tccgttaaagctgtctaggaccacctgattgctc-tttgacgttagc 4413
Query: 558 taagaagtttgcactttattaatccggcggtggttgtat 596
||||||| |||||||||||||||||||| ||||||||||
Sbjct: 4414 taagaaggttgcactttattaatccggc-gtggttgtat 4451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,840
Number of Sequences: 1807
Number of extensions: 13840
Number of successful extensions: 1508
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)