BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC06RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1336 0.0
>3x_Contig1543
Length = 9648
Score = 1336 bits (674), Expect = 0.0
Identities = 798/820 (97%), Gaps = 15/820 (1%)
Strand = Plus / Minus
Query: 49 tagttatcctcagcagtatgatccgtgtaactgacaaactcttgatccttcccaacgaca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4108 tagttatcctcagcagtatgatccgtgtaactgacaaactcttgatccttcccaacgaca 4049
Query: 109 gaacgcggtatcgtcatcatcggaagtgaagccccatgtcctaatgtgttcctatccagt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4048 gaacgcggtatcgtcatcatcggaagtgaagccccatgtcctaatgtgttcctatccagt 3989
Query: 169 gacaattccagatcgaaatccatatcatcttgatctcgatctagaagatcatatatcgtg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3988 gacaattccagatcgaaatccatatcatcttgatctcgatctagaagatcatatatcgtg 3929
Query: 229 gaagacgtactacttccggtgcttcgatccaaaggttgtaaaagaggggatctgatgaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3928 gaagacgtactacttccggtgcttcgatccaaaggttgtaaaagaggggatctgatgaga 3869
Query: 289 gaagcaggagtaccgaccaactcattggttaactttaaattctcaatggtcattctatca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3868 gaagcaggagtaccgaccaactcattggttaactttaaattctcaatggtcattctatca 3809
Query: 349 ttttcttgacattgagaagaacagtataacctgtcattatccaattgagcatcgcaatta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 ttttcttgacattgagaagaacagtataacctgtcattatccaattgagcatcgcaatta 3749
Query: 409 ccacgttcaatcaattggccacaaacggtacaataatcgttgaatgctgacatcgtaaac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3748 ccacgttcaatcaattggccacaaacggtacaataatcgttgaatgctgacatcgtaaac 3689
Query: 469 tagtaggtattgcgcagacaggtatcctcggcttcactggcttgtgaaaaggttttctct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 tagtaggtattgcgcagacaggtatcctcggcttcactggcttgtgaaaaggttttctct 3629
Query: 529 ttccctatctatctcgtgattacacttgaaatcccctcagctactattttcaccatatac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 ttccctatctatctcgtgattacacttgaaatcccctcagctactattttcaccatatac 3569
Query: 589 ccaatatatatattgcttatatatatgtattatataaaaagaatatggacatcgtgcctt 648
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3568 ccaatatatatattgcttatatatatgtattatataaaaagattatggacatcgtgcctt 3509
Query: 649 aatctcaact-aaggtgagctgagttttagcaattaggt-atgaaaatat-atgaccac- 704
|||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct: 3508 aatctcaactaaaggtgagctgagttttagcaattaggtaatgaaataataatgaccaca 3449
Query: 705 cacacatgcgagaatgttc-aaacgtcttaaatgttct-agggcacacgagc-cacatac 761
||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||
Sbjct: 3448 cacacatgcgagaatgttcaaaacgtctaaaatgttctcagggcacacgagcacacatac 3389
Query: 762 accgncagaattggaa-ttttctncgtcattac-cacaaatcgtggca-catgac-catg 817
|||| |||| |||||| |||||| ||||||||| |||||||||||||| |||||| ||||
Sbjct: 3388 accgccagagttggaatttttctccgtcattacacacaaatcgtggcaccatgacacatg 3329
Query: 818 acac-agatcgt-aagacgca-gtttccta-tgtctagcc 853
|||| ||||||| |||||||| |||||||| |||||||||
Sbjct: 3328 acacaagatcgtaaagacgcaggtttcctagtgtctagcc 3289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6296
Number of Sequences: 1807
Number of extensions: 6296
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)