BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZC07RM1.SCF screened BAC_end (1068 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig357 620 e-177 >3x_Contig357 Length = 1454 Score = 620 bits (313), Expect = e-177 Identities = 408/429 (95%), Gaps = 8/429 (1%) Strand = Plus / Minus Query: 47 atataacctgagtagaaaacaactcgtttattatttttgatttgaaaatagaatcatcat 106 ||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||| Sbjct: 498 atataacctgagtagaagagaac-cgtttagtatttttgatttgaaaatagaatcatcat 440 Query: 107 caaactgataagtggagacaaaatcttcggtgaaatccttgtaggattgacttgaatgca 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 caaactgataagtggagacaaaatcttcggtgaaatccttgtaggattgacttgaatgca 380 Query: 167 tgagttttgagagaaattcactattcaagcgagccaaaaacgaaggaattgccttctttg 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 tgagttttgagagaaattcactattcaagcgagccaaaaacgaaggaattgccttctttg 320 Query: 227 gtgtttcatattgggataaaaccattataaaatcgtcaaaatacctgttcccaagtagaa 286 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 319 gtgtttcatattgggataaaaccattataaaatcgtcaaaata-ctgttcccaagtagaa 261 Query: 287 ttcgctaagaatgcagagtttgaaaaatctattatcacatccattggaattttgaagaaa 346 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 260 ttcgctaagaatgcagagtttgaaaaatctatcatcacatccattggaattttgaagaaa 201 Query: 347 gcctctaagactaacgtgggtaattcgttgaataaaagtattaatctctttgggtagggt 406 ||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||| ||| Sbjct: 200 gcctcagagactaacgtgggtaatacgtcg-ataaaagtattaatctcttt-ggtaaggt 143 Query: 407 tcaagttattgggttttgattaaatttatcgtagaaaattgaacccataacaaggaagga 466 |||||||||| |||||||| | || ||||||||||||| |||| ||||||||| |||||| Sbjct: 142 tcaagttatt-ggttttga-tcaagttatcgtagaaaa-tgaagccataacaa-gaagga 87 Query: 467 agattgtca 475 |||| |||| Sbjct: 86 agatcgtca 78 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9234 Number of Sequences: 1807 Number of extensions: 9234 Number of successful extensions: 78 Number of sequences better than 1.0e-20: 1 length of query: 1068 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1052 effective length of database: 10,329,639 effective search space: 10866780228 effective search space used: 10866780228 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)