BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZC07RM1.SCF screened BAC_end
         (1068 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig357                                                          620   e-177

>3x_Contig357 
          Length = 1454

 Score =  620 bits (313), Expect = e-177
 Identities = 408/429 (95%), Gaps = 8/429 (1%)
 Strand = Plus / Minus

                                                                       
Query: 47  atataacctgagtagaaaacaactcgtttattatttttgatttgaaaatagaatcatcat 106
           ||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||
Sbjct: 498 atataacctgagtagaagagaac-cgtttagtatttttgatttgaaaatagaatcatcat 440

                                                                       
Query: 107 caaactgataagtggagacaaaatcttcggtgaaatccttgtaggattgacttgaatgca 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaactgataagtggagacaaaatcttcggtgaaatccttgtaggattgacttgaatgca 380

                                                                       
Query: 167 tgagttttgagagaaattcactattcaagcgagccaaaaacgaaggaattgccttctttg 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgagttttgagagaaattcactattcaagcgagccaaaaacgaaggaattgccttctttg 320

                                                                       
Query: 227 gtgtttcatattgggataaaaccattataaaatcgtcaaaatacctgttcccaagtagaa 286
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 gtgtttcatattgggataaaaccattataaaatcgtcaaaata-ctgttcccaagtagaa 261

                                                                       
Query: 287 ttcgctaagaatgcagagtttgaaaaatctattatcacatccattggaattttgaagaaa 346
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 ttcgctaagaatgcagagtttgaaaaatctatcatcacatccattggaattttgaagaaa 201

                                                                       
Query: 347 gcctctaagactaacgtgggtaattcgttgaataaaagtattaatctctttgggtagggt 406
           |||||  ||||||||||||||||| ||| | |||||||||||||||||||| |||| |||
Sbjct: 200 gcctcagagactaacgtgggtaatacgtcg-ataaaagtattaatctcttt-ggtaaggt 143

                                                                       
Query: 407 tcaagttattgggttttgattaaatttatcgtagaaaattgaacccataacaaggaagga 466
           |||||||||| |||||||| | || ||||||||||||| |||| ||||||||| ||||||
Sbjct: 142 tcaagttatt-ggttttga-tcaagttatcgtagaaaa-tgaagccataacaa-gaagga 87

                    
Query: 467 agattgtca 475
           |||| ||||
Sbjct: 86  agatcgtca 78


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9234
Number of Sequences: 1807
Number of extensions: 9234
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 1068
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1052
effective length of database: 10,329,639
effective search space: 10866780228
effective search space used: 10866780228
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)