BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZC08FM1.SCF screened BAC_end (947 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig409 1104 0.0 >3x_Contig409 Length = 2404 Score = 1104 bits (557), Expect = 0.0 Identities = 642/661 (97%), Gaps = 7/661 (1%) Strand = Plus / Minus Query: 88 tatagaaagcaacaaagtacgtggattataactatcataaacggacactaacccagtagc 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2258 tatagaaagcaacaaagtacgtggattataactatcataaacggacactaacccagtagc 2199 Query: 148 gtcacctgctactaaaagtttaccgtcttgacggaaagtggccgaatgcaccacatcttt 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2198 gtcacctgctactaaaagtttaccgtcttgacggaaagtggccgaatgcaccacatcttt 2139 Query: 208 aaacctagaaaacgtcttgatcacttgtcttgtccttgacgagaagacctgtaccctagt 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2138 aaacctagaaaacgtcttgatcacttgtcttgtccttgacgagaagacctgtaccctagt 2079 Query: 268 agaagaggtaactgcaaaatcatgtggatgctggggattgaaggcaatatgagtcactgc 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2078 agaagaggtaactgcaaaatcatgtggatgctggggattgaaggcaatatgagtcactgc 2019 Query: 328 attgtgctctttaacaagctgagtagatgaataagacctccagtacctctgctctggggt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2018 attgtgctctttaacaagctgagtagatgaataagacctccagtacctctgctctggggt 1959 Query: 388 ggtctgctttggtaacacaggagcctttaccggcgtcactctaggtctcacagacgacat 447 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1958 ggactgctttggtaacacaggagcctttaccggcgtcactctaggtctcacagacgacat 1899 Query: 448 tttcttcacaatatttctaccaatctgatcgcctgaatcacctctatcacttaacagtag 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1898 tttcttcacaatatttctaccaatctgatcgcctgaatcacctctatcacttaacagtag 1839 Query: 508 tctgacgataccaaaccgactgatataactcgcaaattacagggaaatcta-tttatcaa 566 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1838 tctgacgataccaaaccgactgatataactcgcaaattacagggaaatctattttatcaa 1779 Query: 567 ccatgcgatgagctaaagcttcaatcatttttttttttc-aaatctgggttcttttcttt 625 |||||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||| Sbjct: 1778 ccatgcgatgagctaaggcttcaatcattttttttttccaaaatctggtttcttttcttt 1719 Query: 626 gaagactcgagaaatctcg-tgattgtgaattttcagagaagaattaccgttcactgtac 684 |||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||| Sbjct: 1718 gaagactcgaagaatctcgttgattgtgatttttcagagaagaataaccgttcactgtac 1659 Query: 685 tttacaa-cagaataaagggccctttagggccttttatttgcttnttaacctggttcccc 743 ||||||| ||| |||||||| |||||| |||| ||||| ||||| ||||||||||| ||| Sbjct: 1658 tttacaagcag-ataaaggg-cctttaaggccctttatctgctt-ttaacctggtttccc 1602 Query: 744 a 744 | Sbjct: 1601 a 1601 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,477 Number of Sequences: 1807 Number of extensions: 12477 Number of successful extensions: 77 Number of sequences better than 1.0e-20: 1 length of query: 947 length of database: 10,358,551 effective HSP length: 16 effective length of query: 931 effective length of database: 10,329,639 effective search space: 9616893909 effective search space used: 9616893909 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)