BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZC08FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig409                                                         1104   0.0  

>3x_Contig409 
          Length = 2404

 Score = 1104 bits (557), Expect = 0.0
 Identities = 642/661 (97%), Gaps = 7/661 (1%)
 Strand = Plus / Minus

                                                                        
Query: 88   tatagaaagcaacaaagtacgtggattataactatcataaacggacactaacccagtagc 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 tatagaaagcaacaaagtacgtggattataactatcataaacggacactaacccagtagc 2199

                                                                        
Query: 148  gtcacctgctactaaaagtttaccgtcttgacggaaagtggccgaatgcaccacatcttt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 gtcacctgctactaaaagtttaccgtcttgacggaaagtggccgaatgcaccacatcttt 2139

                                                                        
Query: 208  aaacctagaaaacgtcttgatcacttgtcttgtccttgacgagaagacctgtaccctagt 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 aaacctagaaaacgtcttgatcacttgtcttgtccttgacgagaagacctgtaccctagt 2079

                                                                        
Query: 268  agaagaggtaactgcaaaatcatgtggatgctggggattgaaggcaatatgagtcactgc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 agaagaggtaactgcaaaatcatgtggatgctggggattgaaggcaatatgagtcactgc 2019

                                                                        
Query: 328  attgtgctctttaacaagctgagtagatgaataagacctccagtacctctgctctggggt 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 attgtgctctttaacaagctgagtagatgaataagacctccagtacctctgctctggggt 1959

                                                                        
Query: 388  ggtctgctttggtaacacaggagcctttaccggcgtcactctaggtctcacagacgacat 447
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 ggactgctttggtaacacaggagcctttaccggcgtcactctaggtctcacagacgacat 1899

                                                                        
Query: 448  tttcttcacaatatttctaccaatctgatcgcctgaatcacctctatcacttaacagtag 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 tttcttcacaatatttctaccaatctgatcgcctgaatcacctctatcacttaacagtag 1839

                                                                        
Query: 508  tctgacgataccaaaccgactgatataactcgcaaattacagggaaatcta-tttatcaa 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1838 tctgacgataccaaaccgactgatataactcgcaaattacagggaaatctattttatcaa 1779

                                                                        
Query: 567  ccatgcgatgagctaaagcttcaatcatttttttttttc-aaatctgggttcttttcttt 625
            |||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||
Sbjct: 1778 ccatgcgatgagctaaggcttcaatcattttttttttccaaaatctggtttcttttcttt 1719

                                                                        
Query: 626  gaagactcgagaaatctcg-tgattgtgaattttcagagaagaattaccgttcactgtac 684
            ||||||||||  ||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1718 gaagactcgaagaatctcgttgattgtgatttttcagagaagaataaccgttcactgtac 1659

                                                                        
Query: 685  tttacaa-cagaataaagggccctttagggccttttatttgcttnttaacctggttcccc 743
            ||||||| ||| |||||||| |||||| |||| ||||| ||||| ||||||||||| |||
Sbjct: 1658 tttacaagcag-ataaaggg-cctttaaggccctttatctgctt-ttaacctggtttccc 1602

             
Query: 744  a 744
            |
Sbjct: 1601 a 1601


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,477
Number of Sequences: 1807
Number of extensions: 12477
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)