BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZC09FM1.SCF screened BAC_end
         (958 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig449                                                          410   e-114

>3x_Contig449 
          Length = 1952

 Score =  410 bits (207), Expect = e-114
 Identities = 294/314 (93%), Gaps = 7/314 (2%)
 Strand = Plus / Minus

                                                                        
Query: 407  ttgactaatgataaatcattagaagtcagatgtaatgcttcatacggtggttggtttgtt 466
            ||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1952 ttgactaatgatanaatattagaagtcagatgtaatgcttcatacggtg-ttggtttgtt 1894

                                                                        
Query: 467  gattgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttata 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 gattgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttata 1834

                                                                        
Query: 527  cgaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagct-ccaa 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1833 cgaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaa 1774

                                                                        
Query: 586  agaaatcgttgacagaactttctcc-acgtatgccgatgtgtgcccag-atgatcttgaa 643
            ||||||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||
Sbjct: 1773 agaaatcgttgacagaactttctccaacgtatgcggatgtgtggccagaatgatcttgaa 1714

                                                                        
Query: 644  gccacaaaa-ctagttccactggaac-cacacattccagttttacttttgcacttggcat 701
            ||  ||||| |||||||||||||||| ||| |||||||| | |||| | ||||||| |||
Sbjct: 1713 gcaccaaaacctagttccactggaacacac-cattccagctctactctcgcacttgccat 1655

                          
Query: 702  tcaacactggattc 715
            ||||||||| ||||
Sbjct: 1654 tcaacactgcattc 1641


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,753
Number of Sequences: 1807
Number of extensions: 12753
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)