BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZC09FM1.SCF screened BAC_end (958 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig449 410 e-114 >3x_Contig449 Length = 1952 Score = 410 bits (207), Expect = e-114 Identities = 294/314 (93%), Gaps = 7/314 (2%) Strand = Plus / Minus Query: 407 ttgactaatgataaatcattagaagtcagatgtaatgcttcatacggtggttggtttgtt 466 ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1952 ttgactaatgatanaatattagaagtcagatgtaatgcttcatacggtg-ttggtttgtt 1894 Query: 467 gattgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttata 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893 gattgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttata 1834 Query: 527 cgaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagct-ccaa 585 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1833 cgaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaa 1774 Query: 586 agaaatcgttgacagaactttctcc-acgtatgccgatgtgtgcccag-atgatcttgaa 643 ||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| Sbjct: 1773 agaaatcgttgacagaactttctccaacgtatgcggatgtgtggccagaatgatcttgaa 1714 Query: 644 gccacaaaa-ctagttccactggaac-cacacattccagttttacttttgcacttggcat 701 || ||||| |||||||||||||||| ||| |||||||| | |||| | ||||||| ||| Sbjct: 1713 gcaccaaaacctagttccactggaacacac-cattccagctctactctcgcacttgccat 1655 Query: 702 tcaacactggattc 715 ||||||||| |||| Sbjct: 1654 tcaacactgcattc 1641 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,753 Number of Sequences: 1807 Number of extensions: 12753 Number of successful extensions: 69 Number of sequences better than 1.0e-20: 1 length of query: 958 length of database: 10,358,551 effective HSP length: 16 effective length of query: 942 effective length of database: 10,329,639 effective search space: 9730519938 effective search space used: 9730519938 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)