BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC09RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig947 1277 0.0
>3x_Contig947
Length = 3468
Score = 1277 bits (644), Expect = 0.0
Identities = 725/750 (96%), Gaps = 3/750 (0%)
Strand = Plus / Minus
Query: 45 cttaatagaagagaagaattgctgaaacaagacgtttctcttaggaaagattacagtatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 cttaatagaagagaagaattgctgaaacaagacgtttctcttaggaaagattacagtatc 1943
Query: 105 ttgcttcgcaagattacaagtgtctgccaggtattagaatcattaggtgagcctattcac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 ttgcttcgcaagattacaagtgtctgccaggtattagaatcattaggtgagcctattcac 1883
Query: 165 atcaatttaaatggataccccatcttccaacagccagattatcagaagtttaaagattgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 atcaatttaaatggataccccatcttccaacagccagattatcagaagtttaaagattgg 1823
Query: 225 gatgctctggtaccacttttgaagagtttagaagaagtgaactcgttgcccttggatgaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 gatgctctggtaccacttttgaagagtttagaagaagtgaactcgttgcccttggatgaa 1763
Query: 285 atcgagatcccagaagctttacaagaatcttatgaattatttaagatgactccattacta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 atcgagatcccagaagctttacaagaatcttatgaattatttaagatgactccattacta 1703
Query: 345 tataaggatggttctgaatgaaagtttggcttgtcctgaattatctttttcttctcctct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 tataaggatggttctgaatgaaagtttggcttgtcctgaattatctttttcttctcctct 1643
Query: 405 cgttccgtatcatgttctcaacggctcgtgtgttgatgaacagttccaacaaaaattttc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 cgttccgtatcatgttctcaacggctcgtgtgttgatgaacagttccaacaaaaattttc 1583
Query: 465 gaactgagggtttgaatcggtactctcccaataattcataaacttgttcaaacatttctg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gaactgagggtttgaatcggtactctcccaataattcataaacttgttcaaacatttctg 1523
Query: 525 ggctttggaatctactangcccatacttggactggagagcagttatctctttgatcgcac 584
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 ggctttggaatctactaggcccatacttggactggagagcagttatctctttgatcgcac 1463
Query: 585 cattcagaaagatatngttgcccatatcgcttactattcttaggatcctattngtgatct 644
||||||||| ||||| ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1462 cattcagaaggatattgttgcccatatcgcttactatccttaggatcctattgttgatct 1403
Query: 645 tgtcatcttc-aacacatctgggcag-ttcgactcatttgtttgggatatttttcggatc 702
|||||||||| ||||||||| ||||| ||||||||||||||||||||||| | |||||||
Sbjct: 1402 tgtcatcttcaaacacatct-ggcagtttcgactcatttgtttgggatatctctcggatc 1344
Query: 703 cctcgtttcaatncttgtttgnccttttcccgctggncgggattaacaaacgtttcggat 762
|||||| |||| |||||||| ||| |||| ||||| ||||||| ||| |||| ||||||
Sbjct: 1343 gctcgttccaattcttgtttgtcctcttcctgctggtcgggattcacagacgtctcggat 1284
Query: 763 cttttccattccataaagttggctaaaggg 792
|||| |||||||| |||||| ||||||||
Sbjct: 1283 ctttcccattccaataagttgtctaaaggg 1254
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6733
Number of Sequences: 1807
Number of extensions: 6733
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)