BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC10FM1.SCF screened BAC_end
(1015 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 462 e-130
>3x_Contig1252
Length = 5616
Score = 462 bits (233), Expect = e-130
Identities = 261/269 (97%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 88 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4139 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 4080
Query: 148 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 4020
Query: 208 gtactgttttttttaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 267
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 gtactgttttttcaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 3960
Query: 268 actgtactggtttaaatacaagtcaaatgcaggatgcttatttacgtgtttaggggattg 327
|||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||
Sbjct: 3959 actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttca-gggattg 3901
Query: 328 cctcaactaatgaactattactggacttt 356
|||||||||||||||||| |||| |||||
Sbjct: 3900 cctcaactaatgaactataactgcacttt 3872
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,222
Number of Sequences: 1807
Number of extensions: 18222
Number of successful extensions: 173
Number of sequences better than 1.0e-20: 1
length of query: 1015
length of database: 10,358,551
effective HSP length: 16
effective length of query: 999
effective length of database: 10,329,639
effective search space: 10319309361
effective search space used: 10319309361
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)