BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC10RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 928 0.0
>3x_Contig1794
Length = 36744
Score = 928 bits (468), Expect = 0.0
Identities = 527/540 (97%), Gaps = 5/540 (0%)
Strand = Plus / Minus
Query: 46 ttgtctcgatagaagcgctcacagtaggaggttttaatttaattttcaatttggatggat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4227 ttgtctcgatagaagcgctcacagtaggaggttttaatttaattttcaatttggatggat 4168
Query: 106 caccaagtaacacttcttcgtatatcctgtaaagagatgaaggatattgattccaaacac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4167 caccaagtaacacttcttcgtatatcctgtaaagagatgaaggatattgattccaaacac 4108
Query: 166 gttttaacaactgcttagcttcttcaatgcaggacaatttccaataagaatatacggcag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4107 gttttaacaactgcttagcttcttcaatgcaggacaatttccaataagaatatacggcag 4048
Query: 226 tcattcccagtcctaaagtaaaccactgtttgtataggttgaataaaggattctttatca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4047 tcattcccagtcctaaagtaaaccactgtttgtataggttgaataaaggattctttatca 3988
Query: 286 tttgaataatgtactgatattcatcattggcagccaaataatgatccatgaaatatcttg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 tttgaataatgtactgatattcatcattggcagccaaataatgatccatgaaatatcttg 3928
Query: 346 ctcctaaaggatcttccaaaggtgataaagaaagaagagttttacaccactgagcggctg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 ctcctaaaggatcttccaaaggtgataaagaaagaagagttttacaccactgagcggctg 3868
Query: 406 ttgaaacggcacctctttgagatacgatttgaatatatctcatgatagccaaataaaact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 ttgaaacggcacctctttgagatacgatttgaatatatctcatgatagccaaataaaact 3808
Query: 466 gtctgttgtaaaaatatatgtagggaagttggaaattctttatcagtgaacttaaatccc 525
||||||||||||||||||||||||||||||||||| || ||| |||||||| | ||||||
Sbjct: 3807 gtctgttgtaaaaatatatgtagggaagttggaaa-tccttagcagtgaac-tcaatccc 3750
Query: 526 attttttaaacaacggtttgaagacaaatagggcccgtttaaaccaaatccattactgtt 585
|||||| ||||||||| | |||||||||||| || || || ||||||| |||||||||||
Sbjct: 3749 atttttcaaacaacgg-tcgaagacaaatagtgcacg-ttcaaccaaa-ccattactgtt 3693
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,728
Number of Sequences: 1807
Number of extensions: 17728
Number of successful extensions: 236
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)