BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC11FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 961 0.0
>3x_Contig1319
Length = 7600
Score = 961 bits (485), Expect = 0.0
Identities = 579/600 (96%), Gaps = 8/600 (1%)
Strand = Plus / Minus
Query: 86 taagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggtaaaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 taagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggtaaaat 1487
Query: 146 gcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataaacgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataaacgt 1427
Query: 206 tatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagccacatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 tatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagccacatg 1367
Query: 266 ctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatgaccc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatgaccc 1307
Query: 326 aaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttacaaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 aaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttacaaag 1247
Query: 386 gaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccctgcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccctgcg 1187
Query: 446 atatctgcataatggagtaaggaagggtctcagggaacctcttgagactgttagaaatca 505
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 1186 atatctgcataatggagtaaggaa-ggtctcagggaacctcttgagactgttag-aatca 1129
Query: 506 aatgatgatttanggaataaacgaaatagacactgcatccgaaagtgaagacaatgacca 565
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1128 aatgatgatttaggg-ataaacgaaatagacactgcatcggaaagtgaagacaatga-ca 1071
Query: 566 ttttgaacaacgatgaaaatgataatgaaagtaatgggatttgatagccagaacccagcg 625
| |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct: 1070 atatgaacaacgatgaaaatgataatgaaagtaat-ggatatgatagccagaa-ccagcg 1013
Query: 626 aggtagaaaaaaatcctttaatgaccggagaaactgattgttgaaatgatgccccacaac 685
|| ||||||||| | |||||||| |||| |||||| || ||||||||||||| |||||
Sbjct: 1012 agtaggaaaaaaatacattaatgacgggag-aactga-tggtgaaatgatgcccgacaac 955
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7843
Number of Sequences: 1807
Number of extensions: 7843
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)