BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC12FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1661 864 0.0
>3x_Contig1661
Length = 14612
Score = 864 bits (436), Expect = 0.0
Identities = 547/574 (95%), Gaps = 8/574 (1%)
Strand = Plus / Plus
Query: 85 acgttccaaacagaaaaaaaaacatctgatacctaccataaaccttccggttcatggtta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 acgttccaaacagaaaaaaaaacatctgatacctaccataaaccttccggttcatggtta 4953
Query: 145 tatggcagaacgtttccccaggtccgtttgtcttatatatctgattcagaatcatgaata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 tatggcagaacgtttccccaggtccgtttgtcttatatatctgattcagaatcatgaata 5013
Query: 205 ataataataatatttttctataaaaaccctcgagaaatctaattcaagaaactaaggcaa 264
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 ataataataatatttggctataaaaaccctcgagaaatctaattcaagaaactaaggcaa 5073
Query: 265 gaagaaactaccttttaacaagccaagagaataaaccaatgagataaccgagatagctgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 gaagaaactaccttttaacaagccaagagaataaaccaatgagataaccgagatagctgg 5133
Query: 325 gacgtttgaagaatttcccttaattgatggatcccagaaactgacatttgtgacatttcc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 gacgtttgaagaatttcccttaattgatggatcccagaaactgacatttgtgacatttcc 5193
Query: 385 acaagtgacgtttgacatattattcagtatttcgtatgctatagactatattagagggct 444
|||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 5194 acaagtgacgttggacatattattcagtattcggtatgctatagactatataagagggct 5253
Query: 445 aantaatattgcg-tagtagtgtgtaaattccag-tttgccattgtccctttcagccgna 502
|| ||||| |||| ||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct: 5254 aattaata-tgcgttagtagtgtgt-aattccagttttgcaattgtccctttcagccgga 5311
Query: 503 tctggggaaaggaagttttggggacaaaaaaaagcgtttctagcggccgtttttcgtgta 562
||||||||||||||||||||||||| |||||||||| |||||| || ||||| ||||||
Sbjct: 5312 tctggggaaaggaagttttggggac-aaaaaaagcggttctaggcgcggttttccgtgta 5370
Query: 563 gtcagcaaaaaaatttgtggcagttatattgttttattgtagggagagtaagggaccttg 622
|||||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||| ||
Sbjct: 5371 gtcagcaaaaaaatttgt-gcagttatatcggtttatcgtagggagagtaa-ggacc-tg 5427
Query: 623 aagggatttgtccggatgaaagcctaacggggag 656
|| ||||||||||||||||||| |||||||||||
Sbjct: 5428 aaaggatttgtccggatgaaaggctaacggggag 5461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9541
Number of Sequences: 1807
Number of extensions: 9541
Number of successful extensions: 242
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)