BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZD03FM1.SCF screened BAC_end (968 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1009 1116 0.0 >3x_Contig1009 Length = 4650 Score = 1116 bits (563), Expect = 0.0 Identities = 613/623 (98%), Gaps = 5/623 (0%) Strand = Plus / Minus Query: 86 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541 Query: 146 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481 Query: 206 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421 Query: 266 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361 Query: 326 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301 Query: 386 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241 Query: 446 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181 Query: 506 tgttggctttttcttttgcatcttag-aacgtgtgtaggactgagagttttgtgcgaaat 564 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121 Query: 565 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcatttgtg 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtca-ttgtg 1062 Query: 625 aacgacgccgacacatatggctgtgcc-ggggcctgttaccttttttcaaacagtagtaa 683 ||||||||||||||||| ||||||||| |||||||| |||| |||| || |||||||||| Sbjct: 1061 aacgacgccgacacatagggctgtgccgggggcctg-tacccttttccacacagtagtaa 1003 Query: 684 ttaataataaacattaacttcgg 706 ||||||||||||||| |||||| Sbjct: 1002 -taataataaacattagcttcgg 981 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8083 Number of Sequences: 1807 Number of extensions: 8083 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 968 length of database: 10,358,551 effective HSP length: 16 effective length of query: 952 effective length of database: 10,329,639 effective search space: 9833816328 effective search space used: 9833816328 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)