BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD03RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1503 0.0
>3x_Contig1426
Length = 8319
Score = 1503 bits (758), Expect = 0.0
Identities = 835/849 (98%), Gaps = 9/849 (1%)
Strand = Plus / Plus
Query: 54 gcttcatggtagagaacaacaatgaactatactatttgtttggagtagtgttagggtctt 113
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1775 gcttcatgg-agagaacaacaatgaactatactatttgtttggagtagtgttagg-tctt 1832
Query: 114 gcaatatataacagtactatattggacttacattttgcgagggccatgtacaagaaacta 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 gcaatatataacagtactatattggacttacattttgcgagggccatgtacaagaaacta 1892
Query: 174 tgcaatgagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagatat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1893 tgcaatgagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagaaat 1952
Query: 234 ttaaagaaaatgttgagttattcggaactagattttagtgatatatttggattgtcgttt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1953 ttaaagaaaatgttgagttattcggaactagattttagtgatatatttggattgtcgttt 2012
Query: 294 gagaccacgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacgga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 gagaccacgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacgga 2072
Query: 354 ggagaatcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 ggagaatcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaat 2132
Query: 414 ttttatatgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaaga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 ttttatatgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaaga 2192
Query: 474 gtcatcggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 gtcatcggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatc 2252
Query: 534 tgtggcagcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 tgtggcagcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaa 2312
Query: 594 ggcggattccataaccaaaccccggtagtggaatggctatgggaaatactaccacaatta 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 ggcggattccataaccaaaccccggtagtggaatggctatgggaaatactaccacaatta 2372
Query: 654 tcccatgaacagcaacgtcaatttctccatttcgtgactgggagtgacagagttccagtg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 tcccatgaacagcaacgtcaatttctccatttcgtgactgggagtgacagagttccagtg 2432
Query: 714 acgggacttgcgacgcttccgttc-aggtaacccgcac-acgttcggat-acatgatcag 770
|||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct: 2433 acgggacttgcgacgcttccgttcaaggtaacccgcacaacgtccggatcacatgatcag 2492
Query: 771 ttgcccactgcccatacctgttt-aacgaactctgcttgtacgaatatgagtcacgtgat 829
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2493 ttgcccactgcccatacctgtttcaacgaactctgcttgtacgaatatgagtcacgtgat 2552
Query: 830 actcttcttctgcgattggtgactgcccctcg-aatgtatga-ggttatgggntttaatt 887
||||||||||||||||||||||||| |||||| ||||||||| ||||||||| || |||
Sbjct: 2553 actcttcttctgcgattggtgactg-ccctcgaaatgtatgagggttatgggtttaaata 2611
Query: 888 atgtcagca 896
|||||||||
Sbjct: 2612 atgtcagca 2620
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5766
Number of Sequences: 1807
Number of extensions: 5766
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)