BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD04FM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 817 0.0
>3x_Contig1652
Length = 14842
Score = 817 bits (412), Expect = 0.0
Identities = 488/506 (96%), Gaps = 6/506 (1%)
Strand = Plus / Plus
Query: 88 ctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctcca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12567 ctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctcca 12626
Query: 148 aaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12627 aaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaaga 12686
Query: 208 aaaggaaataaactatgtattttaacctatttacattgcataatttgaatgatagagtat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12687 aaaggaaataaactatgtattttaacctatttacattgcataatttgaatgatagagtat 12746
Query: 268 aaagtaattgttaagaaccaaaatgaactactgtattagttaagagtcgcatttggagtt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12747 aaagtaattgttaagaaccaaaatgaactactgtattagttaagagtcgcatttggagtt 12806
Query: 328 gattctgagctggagattttctatgttaatgcaattctaagagaccatgagattctgaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12807 gattctgagctggagattttctatgttaatgcaattctaagagaccatgagattctgaaa 12866
Query: 388 catagctaagtattntatgcatatatgattatagttattcttctccatgcttattaggtg 447
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12867 catagctaagtattttatgcatatatgattatagttattcttctccatgcttattaggtg 12926
Query: 448 atatttgcagntattatatatcgttagtagcgcttgctt-actacttaaattaattc-ga 505
|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct: 12927 atatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatattcaga 12986
Query: 506 tagccacttgaa-gctttaaagtaaccaaactt-attacaccggaac-catgaacaactg 562
|||||||||||| |||| | |||||||| |||| || ||| |||||| |||||||||||
Sbjct: 12987 tagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaacaactc 13046
Query: 563 gatagg-ctttaaccttcatttttgg 587
|||||| |||| ||||||| ||||||
Sbjct: 13047 gataggtctttgaccttcaattttgg 13072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7738
Number of Sequences: 1807
Number of extensions: 7738
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)