BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZD05FM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1534                                                        1084   0.0  

>3x_Contig1534 
          Length = 9979

 Score = 1084 bits (547), Expect = 0.0
 Identities = 686/718 (95%), Gaps = 11/718 (1%)
 Strand = Plus / Minus

                                                                        
Query: 83   cttctggtggtaaatcaacgataaggaaaccattgacaccagcagcaccagcatccttaa 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3396 cttctggtggtaaatcaacgataaggaaaccattgacaccagcagcaccagcatccttaa 3337

                                                                        
Query: 143  tgaatttctcttcaccgtagtttaagataggattatagtaacccatcaatacaattggta 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 tgaatttctcttcaccgtagtttaagataggattatagtaacccatcaatacaattggta 3277

                                                                        
Query: 203  cggtgataccttcttctcttgcttgcttaactagagccaaaacttttggcatatcgatac 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3276 cggtgataccttcttctcttgcttgcttaactagagccaaaacttttggcatatcgatac 3217

                                                                        
Query: 263  cgttcttcaatgcaacagtattggcaatttgaatcactggaccatcagcaactggatcag 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 cgttcttcaatgcaacagtattggcaatttgaatcactggaccatcagcaactggatcag 3157

                                                                        
Query: 323  aaaatggtaagcctaactcaataacatcaacaccaccgtcttggaaacccttcatgattt 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3156 aaaatggtaagcctaactcaataacatcaacaccaccgtcttggaaacccttcatgattt 3097

                                                                        
Query: 383  gaatggtatcctctagggttggatatccagcagtcataaaagtgacaagggcattgcggc 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3096 gaatggtatcctctagggttggatatccagcagtcataaaagtgacaagggcattgcggc 3037

                                                                        
Query: 443  cttctttcttagcgttttcaaacgcttgtctcaacaacacagacatgtttctttagatca 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 cttctttcttagcgttttcaaacgcttgtctcaacaacacagacatgtttctttagatca 2977

                                                                        
Query: 503  atgttgagcttgagatttgataagtggtanaaagatgatagaacaaactttaatcacgct 562
            ||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||
Sbjct: 2976 atgttgagcttgagatttgataagtggtaaaagaatgatagaacaaacttaaatcacgct 2917

                                                                        
Query: 563  tatggattgcatttctcttctgtaaatgagtgtatgtgcgatata-atgtgaagagtact 621
             |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 2916 aatggattgcatttctcttctgtaaatgagtgtatgtgcgatatatatgtgaagagtac- 2858

                                                                        
Query: 622  ttcttttcg-atcga-ttttttttcaccacgaaattaa-tgcagatgactc-aagttagg 677
            ||||||||| ||||| ||||||||||| |||||||||| |||||||||||| |||| |||
Sbjct: 2857 ttcttttcgaatcgatttttttttcacaacgaaattaagtgcagatgactcaaagtaagg 2798

                                                                        
Query: 678  ctagg-agattaattgtagattgattaaca-aagttca-gccccatgcccgcggaactgg 734
            ||||| |||||||| |||||| || ||||| | || || || | |||| ||||| |||||
Sbjct: 2797 ctaggaagattaatagtagatgga-taacagaggtacaggcacgatgcgcgcggtactgg 2739

                                                                      
Query: 735  cttataatcaatttgatttaccaatttg-taaacccgaaatttacttgaataccatga 791
            ||||||||||||||||| |||||||||| |||||| |||| |  ||||||||| ||||
Sbjct: 2738 cttataatcaatttgatataccaatttgataaaccagaaactagcttgaatacgatga 2681


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7390
Number of Sequences: 1807
Number of extensions: 7390
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)