BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD05RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 1515 0.0
>3x_Contig1167
Length = 4801
Score = 1515 bits (764), Expect = 0.0
Identities = 836/850 (98%), Gaps = 8/850 (0%)
Strand = Plus / Minus
Query: 52 atccctcgaagaggaaaacagaacatgcagaaaagaccgcacaaaagcggttttgaaggc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 atccctcgaagaggaaaacagaacatgcagaaaagaccgcacaaaagcggttttgaaggc 4706
Query: 112 tccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaatttg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 tccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaatttg 4646
Query: 172 taccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaactgcta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 taccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaactgcta 4586
Query: 232 cgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctatttc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 cgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctatttc 4526
Query: 292 atattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagtaggt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 atattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagtaggt 4466
Query: 352 ctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgtttcgag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgtttcgag 4406
Query: 412 aaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatatttat 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 aaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatatttat 4346
Query: 472 gggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttgaaagt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 gggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttgaaagt 4286
Query: 532 aggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcgagagtc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 aggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcgagagtc 4226
Query: 592 tttgaaattttttttttttttatctttacgatcgaggagatggcgccatctatgtaaanc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 tttgaaattttttttttttttatctttacgatcgaggagatggcgccatctatgtaaaca 4166
Query: 652 aaacatcttaatagtagaccggatatctatggcctgcatctttgacttactgccatccat 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 aaacatcttaatagtagaccggatatctatggcctgcatctttgacttactgccatccat 4106
Query: 712 taaccttcttatataagcataaacaatcaaaccaactctcacatacatatatatttgttt 771
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4105 taaccttcttatataagcataaacaatcaaacaaactctcacatacatatatatttgttt 4046
Query: 772 acatatagcnagtactatttgttttgaccagg-actgccaaactat-gcagttgttagtg 829
||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct: 4045 acatatagcaagtactatttgttttgaccaggaactgccaaactatagcagttgtaagtg 3986
Query: 830 tttggtaacttt-atccaat-actaataa-gct-gaataaga-gaaagataagttca-tt 883
|||||||||||| ||||||| |||||||| ||| |||||||| ||| |||||||||| ||
Sbjct: 3985 tttggtaactttaatccaataactaataaggctggaataagaggaaggataagttcagtt 3926
Query: 884 ttgcaccgat 893
||||||||||
Sbjct: 3925 ttgcaccgat 3916
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,762
Number of Sequences: 1807
Number of extensions: 14762
Number of successful extensions: 417
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)