BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD06RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1557 1168 0.0
>3x_Contig1557
Length = 10562
Score = 1168 bits (589), Expect = 0.0
Identities = 599/601 (99%), Gaps = 1/601 (0%)
Strand = Plus / Plus
Query: 48 ttatcttccgatgttgaattgaaggactatcagcaaacaggtatcaactggctgcacttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4382 ttatcttccgatgttgaattgaaggactatcagcaaacaggtatcaactggctgcacttg 4441
Query: 108 ctttaccagaacgatttatcttgcatcctagctgatgaaatgggtctcggtaaaacttgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4442 ctttaccagaacgatttatcttgcatcctagctgatgaaatgggtctcggtaaaacttgt 4501
Query: 168 caagtcatctcctttttagcgtatttgaaacaaacacaccataatggcccttatttggta 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4502 caagtcatctcctttttagcgtatttgaaacaaacacaccataatggccctcatttggta 4561
Query: 228 gttgttccatcctctaccttggaaaactggcttcgtgaattcaataaattttgtccacac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4562 gttgttccatcctctaccttggaaaactggcttcgtgaattcaataaattttgtccacac 4621
Query: 288 ttgaaagttgaaccttactatggctctcaacaagaaagggcggaactacgtgatatccta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4622 ttgaaagttgaaccttactatggctctcaacaagaaagggcggaactacgtgatatccta 4681
Query: 348 gaagaaaacgaaggccagtatgatgttattgttactacatataatctagccgctggaacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4682 gaagaaaacgaaggccagtatgatgttattgttactacatataatctagccgctggaacc 4741
Query: 408 aaatatgacgtttccttcctaagaaatcgtaattttgacgttgtggtgtatgatgaaggt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4742 aaatatgacgtttccttcctaagaaatcgtaattttgacgttgtggtgtatgatgaaggt 4801
Query: 468 catatgttgaaaaactcgatgtcagaaagattcaacaaattgatgaaaattaatgcacat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4802 catatgttgaaaaactcgatgtcagaaagattcaacaaattgatgaaaattaatgcacat 4861
Query: 528 ttccgtttgttacttacaggtaccccacttcaaaataacttgaaggaattaatgtctctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4862 ttccgtttgttacttacaggtaccccacttcaaaataacttgaaggaattaatgtctctt 4921
Query: 588 ttggaatttatcatgccaaacctttttgtctct-aaaaggatgatcttgcaaccgttttc 646
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4922 ttggaatttatcatgccaaacctttttgtctctaaaaaggatgatcttgcaaccgttttc 4981
Query: 647 a 647
|
Sbjct: 4982 a 4982
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7655
Number of Sequences: 1807
Number of extensions: 7655
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)