BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD07FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1100 942 0.0
>3x_Contig1100
Length = 4703
Score = 942 bits (475), Expect = 0.0
Identities = 520/531 (97%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 87 cgtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagttataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 cgtttttttgtcctgttcgattctgataatttattgaatacgtcctgtgaaaagttataa 1466
Query: 147 gtattgatttcggtgagatttccttgctgtccactacttttaatttggacttctgaatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 gtattgatttcggtgagatttccttgctgtccactacttttaatttggacttctgaatca 1406
Query: 207 tttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatccttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 tttgcttcttcatggaccaaaacagagctcaattccgagagaactcccttcaatccttct 1346
Query: 267 agtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcacttttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 agtctccttttactttccatcatgcagtcatcagtgacaaagatagctcacgcacttttc 1286
Query: 327 cacaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgcttccgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cacaagtgccaatagagggattgtaatgcgtaataccaaattaaagttatttgcttccgt 1226
Query: 387 tttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatggatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 tttactgactatagggcccattaaactcttcaattaaagttgaagatatcttcatggatc 1166
Query: 447 tggagttggcgtagttgaaattattgacgctctaaacacattgtcaataat-gtcaaccc 505
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1165 tggagttggcgtagttgaaattattgacgctctaaacacattgtcaataatggtcaaccg 1106
Query: 506 tacgattaaccttgacaccactgtattaataaaaagttctaacatattgaaaatttggcc 565
|||||| ||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 1105 tacgataaacctggacaccactgtataaat-aaaagtcctaacatattgaaaatttggcc 1047
Query: 566 tattagaacttagaaggagtgcatgattaacgcactttgtatgccgaaacc 616
||| |||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1046 tatgagaactcagaaggagtgcatgattaacgcac-ttgtatgcagaaacc 997
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8213
Number of Sequences: 1807
Number of extensions: 8213
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)