BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD07RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1451 0.0
>3x_Contig1803
Length = 52241
Score = 1451 bits (732), Expect = 0.0
Identities = 820/843 (97%), Gaps = 7/843 (0%)
Strand = Plus / Minus
Query: 46 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32707 tagaaattgattacattgacgaaagtgaggttttgactcctgctgactggaaaggacata 32648
Query: 106 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32647 tcaagaagaacgatttcaatgtaccatttgtttgcggtgcaaaagatctcggtgaagcac 32588
Query: 166 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32587 ttagaagaatagaagaaggtgcagcaatgatccgtaccaagggtgaagctggtactggtg 32528
Query: 226 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32527 atgtttctgaagcagttaagcatatcaaaaagattaaatctgaaattaaggaatatcaag 32468
Query: 286 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32467 atactctcggtgatgacacagatttcattaagcaacgcgctgaatctattggtgtttctt 32408
Query: 346 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32407 atgagttactaaagtatgttttggataacgggaagttaccagttgtgaactttgctgccg 32348
Query: 406 gtggtgttgccactcctgccgatgccgctttattaatgcaatt--gggttgtgaaggtgt 463
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32347 gtggtgttgccactcctgccgatgccgctttattaatgcaattgcgggttgtgaaggtgt 32288
Query: 464 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32287 atttgtcgggtcaggtatcttcaaatcttctgacccagaaaagctagctcgtgcaattgt 32228
Query: 524 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32227 ggaagctactacccattacgatgatgcagaaactttgttgaaagtgtcaactgatttggg 32168
Query: 584 tgacctaatgggtggattgtcaatagaatccttgaagaactccgannacccttanaggtt 643
||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 32167 tgacctaatgggtggattgtcaatagaatccttgaagaactccgaaaaccctaaaaggtt 32108
Query: 644 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32107 ggcaaacatcggctggtagttacgaaacagtatacagcgataggtatttttacatattca 32048
Query: 704 agttaagacgaaccanagtttatatttgattttataatgctgnctttgtt-acaacttat 762
||| ||||||||| | |||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 32047 agtaaagacgaacaaaagtttata-ttgattttataatgctg-ctttgttaacaacttat 31990
Query: 763 taaacaagagagtatcagcttttacatttaggagtcacaacctgatttacgagagaagct 822
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 31989 caaacaagagagtatcagctttacaatttaggagtcacaacctgattaacgagagaagct 31930
Query: 823 gtttaccatttttcaggcaaatactt-attacgattacgaattgcgt-aaataccaagga 880
|| ||||||||||||||||||||||| || ||||| ||||||||||| |||||| |||||
Sbjct: 31929 gtataccatttttcaggcaaatacttaataacgataacgaattgcgtaaaatacaaagga 31870
Query: 881 ata 883
|||
Sbjct: 31869 ata 31867
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6400
Number of Sequences: 1807
Number of extensions: 6400
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)