BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD08FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1108 0.0
>3x_Contig1801
Length = 57606
Score = 1108 bits (559), Expect = 0.0
Identities = 629/646 (97%), Gaps = 5/646 (0%)
Strand = Plus / Plus
Query: 87 agaagttgtcagctgcatgcttcatgctggctgcataaaatatcagcaagattattctcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56226 agaagttgtcagctgcatgcttcatgctggctgcataaaatatcagcaagattattctcg 56285
Query: 147 gtcttcggtgcctctaaacgtacatacggaaacagagtacaacagaggtacggtatacct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56286 gtcttcggtgcctctaaacgtacatacggaaacagagtacaacagaggtacggtatacct 56345
Query: 207 ggatgtgttcttataatgcacatatatataggtaagtaggtaagtaatatggtttgtcaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56346 ggatgtgttcttataatgcacatatatataggtaagtaggtaagtaatatggtttgtcaa 56405
Query: 267 tccacgggcttgtcccacttttggctctggcattttgctgcatcttggaacgcatttatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56406 tccacgggcttgtcccacttttggctctggcattttgctgcatcttggaacgcatttatt 56465
Query: 327 ttcaattgttctttagtctcgagaagtccctttttttttgataattaaaattttaaagat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56466 ttcaattgttctttagtctcgagaagtccctttttttttgataattaaaattttaaagat 56525
Query: 387 aatcagctcatctttaaggcacacaggtggataacaagtggatacccttgctttagaatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56526 aatcagctcatctttaaggcacacaggtggataacaagtggatacccttgctttagaatc 56585
Query: 447 gtattaaactctattgtagggttcgtgtattatcaagggctctaaaagaaatatggcaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56586 gtattaaactctattgtagggttcgtgtattatcaagggctctaaaagaaatatggcaga 56645
Query: 507 cgagaaacgtgataagcagccggtgaaaggctccagttcgaagactttggttcttctatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56646 cgagaaacgtgataagcagccggtgaaaggctccagttcgaagactttggttcttctatt 56705
Query: 567 ggcttcgctctttttagcggnnttttgggtttttgcttcattaccaggattacgacttcc 626
|||||||||||||||||||| |||||||| |||||| ||| ||||| |||||||| ||
Sbjct: 56706 ggcttcgctctttttagcgg-gttttgggtatttgctccataaccagaattacgacatcg 56764
Query: 627 aacaagtcaaatcgtt-gttgaccagcatttcagtattacgtttgggaacttcctttgga 685
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct: 56765 aacaagtcaaatcgttggttgaccagcatttcagtaatacgttt-ggaacttccattgg- 56822
Query: 686 aaaattggta-tttaagaaaaaaatgatgatgatgagattggtttt 730
|||||||||| || ||||| ||||||||||||||||||||| ||||
Sbjct: 56823 aaaattggtagttgaagaagaaaatgatgatgatgagattgatttt 56868
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8742
Number of Sequences: 1807
Number of extensions: 8742
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)