BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD08RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1373 498 e-140
3x_Contig633 250 4e-66
>3x_Contig1373
Length = 6197
Score = 498 bits (251), Expect = e-140
Identities = 437/494 (88%), Gaps = 4/494 (0%)
Strand = Plus / Plus
Query: 303 agtcttgattataagaaaatactatgaaatttggagcagttataatattgtttacacttc 362
||||| ||||||||| || |||||||||||| | ||||| ||||| | |||| |||||
Sbjct: 13 agtctggattataagtaattactatgaaattagtagcaggaataatttgttttatacttc 72
Query: 363 aattccgacgaatgactacagaaagaaaacaaactcagattgcttacaagcctttatgga 422
|||| |||| |||||| |||||||| ||| ||||| | | |||||| |||| |||
Sbjct: 73 ttttcctacgattgactattttaagaaaactaacgcagatggttgacaagcttttaggga 132
Query: 423 ttgtttcaaacctctatatgagctccataggatgcactccttgatcgacacagacttcat 482
||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 133 gtgtgtcaaacctctatatgagccccataggatgcactcctttatcgacacagacttcat 192
Query: 483 ggaaaaatgtctaagtaccattaatgccagtgctcgttatccattgcttccggaccatat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggaaaaatgtctaagtaccattaatgccagtgctcgttatccattgcttccggaccatat 252
Query: 543 ttcagatagactaaaaccctctcccctancaaagtctctccttgctgcgattggcacttt 602
|||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 253 gtcagatagtctaaaacccattccccgacaaaagtctctccttgctgcgattggcacttt 312
Query: 603 tgatgaagatcttcctcctaatttgcagggtttgcttttagctcaactttttgctattgt 662
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 313 tgatgaagatcttcctcctaatttgcaggttttgcttttagctcaactttctgctattgt 372
Query: 663 tgatctaccttttcga-actcgtgacagatttgaaaagaagcttttcgcttaaatggggg 721
||||||||| |||||| |||||||||||| ||||||||||||||| ||| ||||| ||||
Sbjct: 373 tgatctacc-tttcgatactcgtgacagaattgaaaagaagctttccgc-taaattgggg 430
Query: 722 aaccttacaaagacaagaattccttcttccgaa-ctattaattattctgcgtgccgatta 780
||||||||||||| | |||||||||| |||| |||| | |||||| |||||| ||||
Sbjct: 431 gaccttacaaagacgaagattccttctttcgaagctatcagttattcggcgtgcgaatta 490
Query: 781 ctatctcaaaggat 794
||||| ||||||||
Sbjct: 491 ctatcacaaaggat 504
>3x_Contig633
Length = 1663
Score = 250 bits (126), Expect = 4e-66
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 46 ttgctttcatttaatcttactgttgagaacgctaatgggtatgcagaatttgtcaacatt 105
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 ttgctttcatttaatcttcctgttgagaacgctaatgggtatgcagaatttgtcaacatt 1593
Query: 106 accttcaagggattgcttcagatttattctaagcacttaacgtatttcaactcccaaaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 accttcaagggattgcttcagatttattctaagcacttaacgtatttcaactcccaaaat 1653
Query: 166 gatatgacag 175
||||||||||
Sbjct: 1654 gatatgacag 1663
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7151
Number of Sequences: 1807
Number of extensions: 7151
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)