BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD09FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig267 716 0.0
>3x_Contig267
Length = 1905
Score = 716 bits (361), Expect = 0.0
Identities = 366/368 (99%)
Strand = Plus / Minus
Query: 87 ctgtttaacgcttttctgaagtttgactagttgtgagtccgcttgctccattttcatctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctgtttaacgcttttctgaagtttgactagttgtgagtccgcttgctccattttcatctt 309
Query: 147 tgatagatattcaagctttgtaatataattaacgatgaaattgtcaatcgatttcaactt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgatagatattcaagctttgtaatataattaacgatgaaattgtcaatcgatttcaactt 249
Query: 207 ttcatattccaacttttcaagtgttagatctgtcactaaggtcttgatgatattaatcaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcatattccaacttttcaagtgttagatctgtcactaaggtcttgatgatattaatcaa 189
Query: 267 attcggacttgttccgatagaattgtttataaatattccactcaatatatccgtttcaga 326
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 188 attcggacttgttccgatagaattgtttataaatattccactcaatatttccgtttcaga 129
Query: 327 ccccaatacagcatcttcgaggtcaagattatttacatctccgaacatggcggcttcgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ccccaatacagcatcttcgaggtcaagattatttacatctccgaacatggcggcttcgaa 69
Query: 387 cgcagctttttgagcagttgttatcgtgaccattgngtctggaatcccattgtttgcagg 446
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 68 cgcagctttttgagcagttgttatcgtgaccattgggtctggaatcccattgtttgcagg 9
Query: 447 tgtactcc 454
||||||||
Sbjct: 8 tgtactcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7463
Number of Sequences: 1807
Number of extensions: 7463
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)