BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD09RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1797 1152 0.0
>3x_Contig1797
Length = 34782
Score = 1152 bits (581), Expect = 0.0
Identities = 693/719 (96%), Gaps = 9/719 (1%)
Strand = Plus / Minus
Query: 46 tttgttcaagtctataggtaccttcacatacatacatttacaactttcatttacatttac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 tttgttcaagtctataggtaccttcacatacatacatttacaactttcatttacatttac 3744
Query: 106 attagtttcgtattaggcttcacgcatattgggaatattgaggaagtttctactaagatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3743 attagtttcgtattaggcttcacgcatattgggaatattgaggaagtttctactaagatc 3684
Query: 166 attgtgaattcaacgcctgaatatcatatgttattatcagaaaagttagttggactttta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3683 attgtgaattcaacgcctgaatatcatatgttattatcagaaaagttagttggactttta 3624
Query: 226 gttgattgggaatttcaactcatcgtggtcacctcttaaatcatattcactcagtccaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 gttgattgggaatttcaactcatcgtggtcacctcttaaatcatattcactcagtccaac 3564
Query: 286 tttttttccgaacttctcaaatctttgtagataatgctttctcttcttctctgcaatttg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 tttttttccgaacttctcaaatctttgtagataatgctttctcttcttctctgcaatttg 3504
Query: 346 agttaggacaggccaataggcttcatgattatatttgaagtcgaggttaccaccataaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 agttaggacaggccaataggcttcatgattatatttgaagtcgaggttaccaccataaag 3444
Query: 406 cgtctcgagttgatcaggtggcacataatttggaaatggttcatcaaaaaccaatttttc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 cgtctcgagttgatcaggtggcacataatttggaaatggttcatcaaaaaccaatttttc 3384
Query: 466 acgagtcaacggatcaatanaaggatggatgagcttc-aaaaggtccacgcaagccacgg 524
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3383 acgagtcaacggatcaataaaaggatggatgagcttcaaaaaggtccacgcaagccacgg 3324
Query: 525 gatattagttaataatgctttccctaatctttctggataatgtgtttgtaaaatgtgtaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 gatattagttaataatgctttccctaatctttctggataatgtgtttgtaaaatgtgtaa 3264
Query: 585 aaccctctttaccggtccctaaaggangaaaatcttgagtttaccttgaacctttggaac 644
|| ||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||
Sbjct: 3263 aa-cctctttaccggtccctaaaggaggaatct-ttgag-ttaccttgaacctttggaac 3207
Query: 645 atcagggatattcttttgaatctattcaac-aagcccatgaatcttggccccagaggcat 703
|||| ||||| ||||| |||||| ||||| ||||| ||||||||| |||| |||||||
Sbjct: 3206 atca-ggataatctttgaaatcta-tcaacaaagccaatgaatctt-gcccaggaggcat 3150
Query: 704 gaaattcataacacgtt-aagcatatattcaaggtgcttgaactgtctatgggaagttg 761
||||| |||||||||| |||||||||| ||||||||| || ||||||||||| ||||
Sbjct: 3149 gaaatcaataacacgttcaagcatatatacaaggtgctggacttgtctatgggaggttg 3091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,468
Number of Sequences: 1807
Number of extensions: 14468
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)