BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD11RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1507 0.0
>3x_Contig1680
Length = 12597
Score = 1507 bits (760), Expect = 0.0
Identities = 830/848 (97%), Gaps = 5/848 (0%)
Strand = Plus / Minus
Query: 48 ttcataatgcaaaccttgagcaatatctggagattgttgttcaatggcaaccaaaacgtt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 ttcataatgcaaaccttgagcaatatctggagattgttgttcaatggcaaccaaaacgtt 5450
Query: 108 acaggtcttgtagtcgaaacccttttcggaggaatcgtaaccaatttgcttgatggtgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 acaggtcttgtagtcgaaacccttttcggaggaatcgtaaccaatttgcttgatggtgtc 5390
Query: 168 acggacaatcttttggtagtccaggttggctctggtggtgatttcaccgaaaaccatgat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5389 acggacaatcttttggtagtccaggttggctctggtggtgatttcaccgaaaaccatgat 5330
Query: 228 cataccagtcttggctgcagtttcacatgcaaccttagacaatggatcttctctcaaaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5329 cataccagtcttggctgcagtttcacatgcaaccttagacaatggatcttctctcaaaca 5270
Query: 288 agcgtccaaaatagcatcggaaacttgatcacagatcttatctgggtgaccttcaccaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269 agcgtccaaaatagcatcggaaacttgatcacagatcttatctgggtgaccttcaccaac 5210
Query: 348 agattcagaagtaaacaaaaaagtgttgttgttacccattgtgtatgttagaaacgaata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 agattcagaagtaaacaaaaaagtgttgttgttacccattgtgtatgttagaaacgaata 5150
Query: 408 ttagagtatttgcgcttgcagttccaagtcaaaatgaacacacctcttaacaaacaagat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5149 ttagagtatttgcgcttgcagttccaagtcaaaatgaacacacctcttaacaaacaagat 5090
Query: 468 aatctacgaaaaagatccttgggagaatgatgtacaaatataaatgtacaaatatatata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5089 aatctacgaaaaagatccttgggagaatgatgtacaaatataaatgtacaaatatatata 5030
Query: 528 tataaataattatagcataaaatatacacaattattacaaacttgaacgtgtaaaccata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5029 tataaataattatagcataaaatatacacaattattacaaacttgaacgtgtaaaccata 4970
Query: 588 aatatatatgcacatgcacattatatctccagtctaacttgtgaaaaagtcgntgaatat 647
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4969 aatatatatgcacatgcacattatatctccagtctaacttgtgaaaaagtcgttgaatat 4910
Query: 648 tctgtttttacttatatacaaaattttcgtcctcgaagcatatacctctggcttgatttt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 tctgtttttacttatatacaaaattttcgtcctcgaagcatatacctctggcttgatttt 4850
Query: 708 tctacgagttntttcacagtcgaaaggaaaaaaaaagg-aaacgaacacgagaaattcac 766
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 4849 tctacgagttttttcacagtcgaaaggaaaaaaaaaggaaaacgaacaagagaaattcac 4790
Query: 767 agtgtngaaaagcagctgtaatgatgacagaacttcga-tagcttgatactttacatagt 825
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4789 agtgtgg-aaagcagctgtaatgatgacagaacttcgattagcttgatactttacatagt 4731
Query: 826 atttagaact-ttaagaatggcgtacctttgnactaaattcaagttc-ttggtcaaggat 883
|| |||| || ||| || |||||||| ||| |||| |||||||||| ||||||||||||
Sbjct: 4730 atatagatctattaggatgggcgtaccattggactagattcaagttcattggtcaaggat 4671
Query: 884 tcccatgt 891
|| |||||
Sbjct: 4670 tcgcatgt 4663
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,596
Number of Sequences: 1807
Number of extensions: 10596
Number of successful extensions: 192
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)