BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZD12RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1292 0.0
>3x_Contig1680
Length = 12597
Score = 1292 bits (652), Expect = 0.0
Identities = 800/837 (95%), Gaps = 11/837 (1%)
Strand = Plus / Minus
Query: 50 ttcataatgcaaaccttgagcaatatctggagattgttgttcaatggcaaccaaaacgtt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 ttcataatgcaaaccttgagcaatatctggagattgttgttcaatggcaaccaaaacgtt 5450
Query: 110 acaggtcttgtagtcgaaacccttttcggaggaatcgtaaccaatttgcttgatggtgtc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 acaggtcttgtagtcgaaacccttttcggaggaatcgtaaccaatttgcttgatggtgtc 5390
Query: 170 acggacaatcttttggtagtccaggttggctctggtggtgatactcaccgaaaaccatga 229
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5389 acggacaatcttttggtagtccaggttggctctggtggtgatt-tcaccgaaaaccatga 5331
Query: 230 tcataccagtcttggctgcagtttcacatgcaaccttagacaatggatcttctctcaaac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5330 tcataccagtcttggctgcagtttcacatgcaaccttagacaatggatcttctctcaaac 5271
Query: 290 aagcgtccaaaatagcatcggaaacttgatcacagatcttatctgggtgaccttcaccaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5270 aagcgtccaaaatagcatcggaaacttgatcacagatcttatctgggtgaccttcaccaa 5211
Query: 350 cagattcagaagtaaacaaaaaagtgttgttgttacccattgtgtatgttagaaacgaat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5210 cagattcagaagtaaacaaaaaagtgttgttgttacccattgtgtatgttagaaacgaat 5151
Query: 410 attagagtatttgcgcttgcagttccaagtcaaaatgaacacacctcttaacaaacaaga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5150 attagagtatttgcgcttgcagttccaagtcaaaatgaacacacctcttaacaaacaaga 5091
Query: 470 taatctacgaaaaagatccttgggagaatgatgtacaaatattaatgtacaaatatatat 529
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5090 taatctacgaaaaagatccttgggagaatgatgtacaaatataaatgtacaaatatatat 5031
Query: 530 atataaataattatagcataaaatatacacaattattacaaacttgaacgtgtaaaccat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5030 atataaataattatagcataaaatatacacaattattacaaacttgaacgtgtaaaccat 4971
Query: 590 taatatatatgcacatgcacattatatctncagtctaacttgtgaaaaagtcgttgaata 649
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4970 aaatatatatgcacatgcacattatatctccagtctaacttgtgaaaaagtcgttgaata 4911
Query: 650 ttctgtttttacttatatacaaaattttcgttcctcga-gcatatacctctggcttgatt 708
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 4910 ttctgtttttacttatatacaaaattttcgt-cctcgaagcatatacctctggcttgatt 4852
Query: 709 tttctaccattttttt-acagtccgaaggaaaaaaaagg--aaacgcaacagaaaaatt- 764
||||||| | |||||| |||||| |||||||||||| | ||||| | ||| |||||
Sbjct: 4851 tttctacgagttttttcacagtcgaaaggaaaaaaaaaggaaaacgaacaagagaaattc 4792
Query: 765 acagtgttgaaagcccctgtaatgattacagaacttcaatta-cttgaaactttac-tag 822
||||||| |||||| |||||||||| |||||||||| |||| ||||| ||||||| |||
Sbjct: 4791 acagtgtggaaagcagctgtaatgatgacagaacttcgattagcttgatactttacatag 4732
Query: 823 nattttgaatctattaggaggggcctaccattgg-ctaaatttaagttcattggtca 878
|| | || |||||||||| |||| ||||||||| ||| ||| ||||||||||||||
Sbjct: 4731 tatataga-tctattaggatgggcgtaccattggactagattcaagttcattggtca 4676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,223
Number of Sequences: 1807
Number of extensions: 11223
Number of successful extensions: 190
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)