BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE01FM1.SCF screened BAC_end
(1036 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 470 e-132
>3x_Contig1541
Length = 10565
Score = 470 bits (237), Expect = e-132
Identities = 319/337 (94%), Gaps = 7/337 (2%)
Strand = Plus / Plus
Query: 87 tggatgttaaatgtgatgtactatctatcaatgaatctttgtatttgaatttggctgctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4477 tggatgttaaatgtgatgtactatctatcaatgaatctttgtatttgaatttggctgctt 4536
Query: 147 gcgagcttgaaattaaaaactatagaagttgtatcaattactgtagggaggcactcaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4537 gcgagcttgaaattaaaaactatagaagttgtatcaattactgtagggaggcactcaaac 4596
Query: 207 taaatgcaaaaaacgttaaggcatttttcagaataggtaaggcttatctcgaattgggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4597 taaatgcaaaaaacgttaaggcatttttcagaataggtaaggcttatctcgaattgggaa 4656
Query: 267 ggttcgaagattctcttgaggcccgtcaagttgggcttgccctggatcct-aaaatgggg 325
|||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 4657 ggttcgaagattctctcgaggccgttcaagttgggcttgccgtggatcctgaaaatgggg 4716
Query: 326 cattaaaatcc-ttcagtccaaa-cttctgaaaag-ttaaacct-aaaaggacctggag- 380
||||||||||| | ||||||||| || |||||||| |||||| | ||||||| ||||||
Sbjct: 4717 cattaaaatccatccagtccaaagctactgaaaagcttaaacgtaaaaaggagctggaga 4776
Query: 381 attgtactttaacttaaaaacagaa-gaaaaggaact 416
|| |||||||| || |||||||||| |||||||||||
Sbjct: 4777 atcgtactttagctcaaaaacagaaggaaaaggaact 4813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9689
Number of Sequences: 1807
Number of extensions: 9689
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 1036
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1020
effective length of database: 10,329,639
effective search space: 10536231780
effective search space used: 10536231780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)