BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE01RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig808 1477 0.0
>3x_Contig808
Length = 2957
Score = 1477 bits (745), Expect = 0.0
Identities = 797/813 (98%), Gaps = 1/813 (0%)
Strand = Plus / Minus
Query: 49 gttatgtgacattgacgaagctgttatcagagtttccaaggagtacttaccagagatggc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gttatgtgacattgacgaagctgttatcagagtttccaaggagtacttaccagagatggc 1187
Query: 109 gaagtcttattcccatcctaaggtcaagactcatatcggtgatggattccaattcttgag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 gaagtcttattcccatcctaaggtcaagactcatatcggtgatggattccaattcttgag 1127
Query: 169 agactaccaaaacacttttgacgttatcatcactgactcatctgacccggaaggtccagc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 agactaccaaaacacttttgacgttatcatcactgactcatctgacccggaaggtccagc 1067
Query: 229 cgcctctttgttccaacaatcttacttcgaattgttgaacggtgccttgactgagaaagg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cgcctctttgttccaacaatcttacttcgaattgttgaacggtgccttgactgagaaagg 1007
Query: 289 tgtcatttccactcaagctgaaagtatgtggatccacttgccaatcatcaaggaattgaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tgtcatttccactcaagctgaaagtatgtggatccacttgccaatcatcaaggaattgaa 947
Query: 349 gaaggcttgtaaggaggtcttcccaactgttggttatgcctacaccaccattccaactta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gaaggcttgtaaggaggtcttcccaactgttggttatgcctacaccaccattccaactta 887
Query: 409 tccaaccggtcaaattggttttatggtgtgctctaaggatgccaatgtggatgtcactaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tccaaccggtcaaattggttttatggtgtgctctaaggatgccaatgtggatgtcactaa 827
Query: 469 accgttgagatcaatctcagaagaagaagaagaagccaagtaccgttactacaacaagaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 accgttgagatcaatctcagaagaagaagaagaagccaagtaccgttactacaacaagaa 767
Query: 529 agtgcacgaagcctctttcgtactacctacttgggtcgctaaagaattggacctgtgaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agtgcacgaagcctctttcgtactacctacttgggtcgctaaagaattggacctgtgaca 707
Query: 589 acttaacgaattgataatccctcttttttctttatgcggtcttgtagatcgctatttcta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acttaacgaattgataatccctcttttttctttatgcggtcttgtagatcgctatttcta 647
Query: 649 ttttattcctgacttatcaactattaacgttatcactcatagatttaagctagactaaat 708
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 646 ttttattcctgacttatcaactattaacgttatcactcatagatttaggctagactaatt 587
Query: 709 aatccttcagtctactattatgatcaatgtttcgttgacacaacatattaattagtacta 768
||| |||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct: 586 aattcttcagtctactattaggatcaatgttcgtttgacacaacatattaataagtacta 527
Query: 769 gtgtagccatagataccgccttattatctattttaaactcaatcctctttctttcctttc 828
||||||||||||||||||||||||||||||| | || ||||||||| |||||| | ||||
Sbjct: 526 gtgtagccatagataccgccttattatctatataaatctcaatcctttttcttccttttc 467
Query: 829 ggacatttttgaattctttttctctttgcatta 861
||||||||||| |||||| ||||||||||||||
Sbjct: 466 ggacatttttg-attcttcttctctttgcatta 435
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7996
Number of Sequences: 1807
Number of extensions: 7996
Number of successful extensions: 281
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)