BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE02RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig323 1172 0.0
>3x_Contig323
Length = 1159
Score = 1172 bits (591), Expect = 0.0
Identities = 594/595 (99%)
Strand = Plus / Plus
Query: 48 tgagccagagagcagattcctcaaccctcctatcttcgaacagacctcgttcaacttctg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgagccagagagcagattcctcaaccctcctatcttcgaacagacctcgttcaacttctg 624
Query: 108 ctctcagttcggtgtctaacacggatacaaactctgtatctgaatcaacaacaaatgaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctcagttcggtgtctaacacggatacaaactctgtatctgaatcaacaacaaatgaag 684
Query: 168 aagtagatgaccctctgcaatttgaaactgctaaattaaggaaaacggaactgttgaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtagatgaccctctgcaatttgaaactgctaaattaaggaaaacggaactgttgaatt 744
Query: 228 gtgtgaagttatttaactacaaaactaagaagggaattgcagagtcgataaaaaaaggtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgtgaagttatttaactacaaaactaagaagggaattgcagagtcgataaaaaaaggtt 804
Query: 288 tcatcgaggacgattccagtgttgctattgcaaaatggttattgaataccgatgggcttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcatcgaggacgattccagtgttgctattgcaaaatggttattgaataccgatgggcttg 864
Query: 348 acctatctgccgtaggagaatatcttggtgaaggcaatgaaaaaaatatttctatcatgc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acctatctgccgtaggagaatatcttggtgaaggcaatgaaaaaaatatttctatcatgc 924
Query: 408 acgcatttgttgatcagtttgaatttacaaatctctccatagttagtgctttaagattat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 acgcatttgttgatcagtttgaatttacaaatctctccatagttagtgctttaagattat 984
Query: 468 tccttcaaaagtttagattacctggcgaaggacaaaaaattgatagattcatgcttaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 tccttcaaaagtttagattacctggcgaaggacaaaaaattgatagattcatgcttaaat 1044
Query: 528 tcgctgagcgcttcgttgatcaaaaccctaatgttttctctaaagcagatacagcttatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tcgctgagcgcttcgttgatcaaaaccctaatgttttctctaaagcagatacagcttatg 1104
Query: 588 ttttggcatattcgattattcttttgaataccgacttgcattccactcagatcaa 642
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1105 ttttggcatattcgattattcttttgaataccgaattgcattccactcagatcaa 1159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7970
Number of Sequences: 1807
Number of extensions: 7970
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)