BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE03FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1291 1322 0.0
>3x_Contig1291
Length = 6514
Score = 1322 bits (667), Expect = 0.0
Identities = 714/726 (98%), Gaps = 3/726 (0%)
Strand = Plus / Minus
Query: 85 tgtcgaaatactccacatattgtatatagacccatttaattgtatatgcgaatacccatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 tgtcgaaatactccacatattgtatatagacccatttaattgtatatgcgaatacccatc 5781
Query: 145 tgaatatttttagtctacgcagcgcaacatttaaattgacatattttagttaaggataat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5780 tgaatatttttagtctacgcagcgcaacatttaaattgacatattttagttaaggataat 5721
Query: 205 gaataatcgtttcaatacaacatttacaccagaacataacgaaatttaaccagttcccgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5720 gaataatcgtttcaatacaacatttacaccagaacataacgaaatttaaccagttcccgg 5661
Query: 265 accataggtgaagtttccaagtagaattacagcaatagtgctttattgatgattaaaaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 accataggtgaagtttccaagtagaattacagcaatagtgctttattgatgattaaaaga 5601
Query: 325 ccatcaaatagtaagaagaaggctaatcttcgaagattgacaggtgcattaagggatttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5600 ccatcaaatagtaagaagaaggctaatcttcgaagattgacaggtgcattaagggatttg 5541
Query: 385 ctaggcgaagaggagccaaagaaagaagagaatctaaaacaaattactcgagatggtgtg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 ctaggcgaagaggagccaaagaaagaagagaatctaaaacaaattactcgagatggtgtg 5481
Query: 445 gtttacatcatgtctaaagagaatcgattaattcctaaattgtcagacgaagaggttatg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 gtttacatcatgtctaaagagaatcgattaattcctaaattgtcagacgaagaggttatg 5421
Query: 505 gagcgtcataagaaagcagacgagaatatgaaacgcgtatggtcccagatcatacaaaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5420 gagcgtcataagaaagcagacgagaatatgaaacgcgtatggtcccagatcatacaaaaa 5361
Query: 565 tatgaaagtatagataatcaaggtgatgtaatagatttacanactggagaagtcatagaa 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5360 tatgaaagtatagataatcaaggtgatgtaatagatttacaaactggagaagtcatagaa 5301
Query: 625 gataatggccatttacgaaacttgagcaacgaaaaatcagttctacatagttcgctacca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 gataatggccatttacgaaacttgagcaacgaaaaatcagttctacatagttcgctacca 5241
Query: 685 gatggtgggttcagtgtcttattaaagtgttctgaatgacatattggatatt-aagactt 743
|||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 5240 gatggt-ggttcagtgtcttataaaagtgttctgaatgacattatggatattaaagactc 5182
Query: 744 atcatatatttcatcggtttggcaagatcacgaaacttacaatt-agaaacagggttcga 802
|||||||| |||||||||||||||||||||||||||| || ||| ||||||||||| |||
Sbjct: 5181 atcatataattcatcggtttggcaagatcacgaaactaacgattcagaaacagggtccga 5122
Query: 803 gtctga 808
||||||
Sbjct: 5121 gtctga 5116
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6623
Number of Sequences: 1807
Number of extensions: 6623
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)