BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZE03RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1413                                                        1633   0.0  

>3x_Contig1413 
          Length = 8782

 Score = 1633 bits (824), Expect = 0.0
 Identities = 876/887 (98%), Gaps = 5/887 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   aaggtatcgttttc-cacaattgaagactaccgatccatcatcactgtcttcaacgctaa 105
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512 aaggtatcgttttcacacaattgaagactaccgatccatcatcactgtcttcaacgctaa 4571

                                                                        
Query: 106  ttaaatcagcaaattggaactcgttcgcggaattattaggctggatgagtgaaaaaaagt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4572 ttaaatcagcaaattggaactcgttcgcggaattattaggctggatgagtgaaaaaaagt 4631

                                                                        
Query: 166  ttatctctgtcagtgataaatttatagcagatctcgaaaaaatccctcccaaagttcccc 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4632 ttatctctgtcagtgataaatttatagcagatctcgaaaaaatccctcccaaagttcccc 4691

                                                                        
Query: 226  gtgatcaagagccctctgtgcaccttttaatcctaggaatgcgttatttgaggcttaaaa 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 gtgatcaagagccctctgtgcaccttttaatcctaggaatgcgttatttgaggcttaaaa 4751

                                                                        
Query: 286  actatcctctagaaatgtttgaggaaagtgcagggttcatcaaatctatttcgaagttct 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4752 actatcctctagaaatgtttgaggaaagtgcagggttcatcaaatctatttcgaagttct 4811

                                                                        
Query: 346  ttgctccgtcccaaaacacttctattcgtttggcttatgctgaagtactaagtcaacttt 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 ttgctccgtcccaaaacacttctattcgtttggcttatgctgaagtactaagtcaacttt 4871

                                                                        
Query: 406  tattgccgttggctggagcaatgacagcagaggctaatcatccaacgtggatagaagcaa 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 tattgccgttggctggagcaatgacagcagaggctaatcatccaacgtggatagaagcaa 4931

                                                                        
Query: 466  tgacgtcgatcctagctacctgtaaaaaacttcaaactgacagcaaatgctggacacttg 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932 tgacgtcgatcctagctacctgtaaaaaacttcaaactgacagcaaatgctggacacttg 4991

                                                                        
Query: 526  ctttcaagttgaccgtggcagtgttgtgtgtctcagatactgaattgttttccaaaaact 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4992 ctttcaagttgaccgtggcagtgttgtgtgtctcagatactgaattgttttccaaaaact 5051

                                                                        
Query: 586  ggttatctttgatcgagaagaacgttaccaaaattaaatctaagtcattagaagatcgtg 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5052 ggttatctttgatcgagaagaacgttaccaaaattaaatctaagtcattagaagatcgtg 5111

                                                                        
Query: 646  ttgctttctccatgggcctttcaaggttgatatgggtctatcttttcagatgtactgaaa 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5112 ttgctttctccatgggcctttcaaggttgatatgggtctatcttttcagatgtactgaaa 5171

                                                                        
Query: 706  ccttaaacaatacagacaaaacgttgacaaaattgttctcgttatttttgagttcaaaga 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5172 ccttaaacaatacagacaaaacgttgacaaaattgttctcgttatttttgagttcaaaga 5231

                                                                        
Query: 766  agaaagagaactggatcacgacagatatggatatcataaaccctctatgtgatgttttcg 825
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5232 agaaggagaactggatcacgacagatatggatatcataaaccctctatgtgatgttttcg 5291

                                                                        
Query: 826  tgactgggggatacgttcatcctacccttcgtattggaaaatgtttcttctacatttgat 885
            |||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct: 5292 tgactgtgggatacgttcatccta-ccttcgtatttgaaaatg-ttcttctacatttgat 5349

                                                           
Query: 886  gaaaatctcctttnatggggacgaaatttagagaatattgcacatga 932
            ||||  ||||||| || |||||| |||||||||||||||||||||||
Sbjct: 5350 gaaatcctcctttaat-gggacg-aatttagagaatattgcacatga 5394


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6711
Number of Sequences: 1807
Number of extensions: 6711
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)