BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE04FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1479 783 0.0
>3x_Contig1479
Length = 7316
Score = 783 bits (395), Expect = 0.0
Identities = 428/438 (97%), Gaps = 1/438 (0%)
Strand = Plus / Minus
Query: 89 gctgttgttagcatttcttttgttacctaccactctttgccatagttgacaagaatncaa 148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3925 gctgttgttagcatttcttttgttacctaccactctttgccatagttgacaagaat-caa 3867
Query: 149 tcagaaaaacaacaacaacaacaacaacagtctaagagaccacgtcgaataaatgccatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 tcagaaaaacaacaacaacaacaacaacagtctaagagaccacgtcgaataaatgccatt 3807
Query: 209 attatcctttcatcccaaccctcattaatgtcaaatcaaaaaaagatgaaacaccttttt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 attatcctttcatcccaaccctcattaatgtcaaatcaaaaaaagatgaaacaccttttt 3747
Query: 269 attttttgtgtttatgtatgtctctgtgttgatcgaaggaaagaaagatcattttgcact 328
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3746 attttttgtgtttatgtatgtctctgtgttgatcgaaggaaagaaggatcattttgcact 3687
Query: 329 tcttttgaagatgttccaaccattgttttaggttttacctcatacattcaaacatgttat 388
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 tctttgaaagatgttccaaccattgttttaggttttacctcatacattcaaacatgttat 3627
Query: 389 aaagttggaatataccatgaattcaatccgatatatcacgaactatgagaaaattcaaac 448
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 3626 aaagttggaatataccatgaattcaatcgaatatatcacgaactatgagaaaatccaaac 3567
Query: 449 ggtatgaaaacaaatttgatcttttatcagaaagctgatactcactatcagttaaaaatc 508
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 3566 ggtatgaaaacaaatttgatcttttatcagaatgctgatactcactatcagttaataatc 3507
Query: 509 ctctnttttttcctttta 526
|||| |||||||||||||
Sbjct: 3506 ctcttttttttcctttta 3489
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,991
Number of Sequences: 1807
Number of extensions: 10991
Number of successful extensions: 544
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)