BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1287 0.0
>3x_Contig1688
Length = 18058
Score = 1287 bits (649), Expect = 0.0
Identities = 708/723 (97%), Gaps = 4/723 (0%)
Strand = Plus / Plus
Query: 88 gagctaatagtgaggaacccaagaattgagttagtctttcaaggctggcagttggaattt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4128 gagctaatagtgaggaacccaagaattgagttagtctttcaaggctggcagttggaattt 4187
Query: 148 cattttcattgttttccagatatgtaatcaaattcggcaatgttctgttcagcattggca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4188 cattttcattgttttccagatatgtaatcaaattcggcaatgttctgttcagcattggca 4247
Query: 208 atgataactttttcgaataaagaataaatgatgataaaggatcaaatgcttttgatactg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4248 atgataactttttcgaataaagaataaatgatgataaaggatcaaatgcttttgatactg 4307
Query: 268 aatgtacttgtagtgcgaactcaaaacctatttctatcatttcggaaatagggatgcttc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 aatgtacttgtagtgcgaactcaaaacctatttctatcatttcggaaatagggatgcttc 4367
Query: 328 ctgcttcaggctttgcatggtgacttaaaaattcatcctgatgtgaagtctgctgagtat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4368 ctgcttcaggctttgcatggtgacttaaaaattcatcctgatgtgaagtctgctgagtat 4427
Query: 388 gttctgcaagcctctgcataaaggttgataaaactttctctgttggtaaaatatccataa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4428 gttctgcaagcctctgcataaaggttgataaaactttctctgttggtaaaatatccataa 4487
Query: 448 tgatgtgtcgaagtaaagaatctttgagtgaaatcatgccttccattaccgagaaaatct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4488 tgatgtgtcgaagtaaagaatctttgagtgaaatcatgccttccattaccgagaaaatct 4547
Query: 508 gagcgttctgaccaaaatcgataaccgaggatgataaaaggaatatctctttaaatcttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4548 gagcgttctgaccaaaatcgataaccgaggatgataaaaggaatatctctttaaatc-tt 4606
Query: 568 gac-agtagtcggtgtagtttctttgg-caacgagactttcgatggtacggagcacctgn 625
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4607 gacaagtagtcggtgtagtttctttggccaacgagactttcgatggtacggagcacctgg 4666
Query: 626 attgccctatcaatgaaagtagctgaaattgcactttcatcaatttaatcaaaaagtttg 685
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4667 attgccctatcaatgaaagtagctgaaattgcactttcatcaattaaatcaaaaagtttg 4726
Query: 686 tacatgaacctcacacngttcggcttcttcgcagaanacaggagcaaacttttgcttttg 745
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 4727 tacatgaacctcacac-gttcggcttcttcgcagaaaacaggagcaaacttttgctttcg 4785
Query: 746 cagttcaatcgttctaattgtttaagaagagccagttatactttgccttttctcagacaa 805
|||||||||||||||||||||| | || |||||||||||||| ||||| |||||||||
Sbjct: 4786 cagttcaatcgttctaattgttaaggagaagccagttatacttgccctttcctcagacaa 4845
Query: 806 acc 808
|||
Sbjct: 4846 acc 4848
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6824
Number of Sequences: 1807
Number of extensions: 6824
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)