BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE07FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1030 585 e-167
>3x_Contig1030
Length = 5200
Score = 585 bits (295), Expect = e-167
Identities = 335/343 (97%), Gaps = 4/343 (1%)
Strand = Plus / Minus
Query: 87 ttgattcaatgctaccaaccgaatatccatctcgtgaagctttcgctgatcctgaatctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ttgattcaatgctaccaaccgaatatccatctcgtgaagctttcgctgatcctgaatctt 1273
Query: 147 tatcggctaagaaaaatataaacgtatttgtaacaggtgttactggattcttgggatcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 tatcggctaagaaaaatataaacgtatttgtaacaggtgttactggattcttgggatcct 1213
Query: 207 acatcctagcagacctcctcaatcgcccgacctcttcctacaatattaaggtttttgccc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 acatcctagcagacctcctcaatcgcccgacctcttcctacaatattaaggtttttgccc 1153
Query: 267 atgtcagagctaaaactgaggctgctggttttaacaggttaaaacaagctggtataactt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 atgtcagagctaaaactgaggctgctggttttaacaggttaaaacaagctggtataactt 1093
Query: 327 atggtacttggtcagattctttcat-aatagatttgatgttgtgttaggtgacctttctt 385
||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
Sbjct: 1092 atggtacttggtcagattctttcataaatagaattgaggttgtgttaggtgacctttc-t 1034
Query: 386 aagaaaaagttcggttttgccagaaggcactttggagcaactt 428
||| | |||||||| ||||||||||||||| ||||||||||||
Sbjct: 1033 aaggagaagttcgg-tttgccagaaggcac-ttggagcaactt 993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,240
Number of Sequences: 1807
Number of extensions: 19240
Number of successful extensions: 2012
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)