BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE08FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig419 188 1e-47
>3x_Contig419
Length = 1943
Score = 188 bits (95), Expect = 1e-47
Identities = 162/177 (91%), Gaps = 6/177 (3%)
Strand = Plus / Minus
Query: 515 tatggtatctgcatgttatctgtt-cttcgtaatctaagga-tgaatcagtagacaggca 572
|||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 1943 tatggtatctgcatgt-atctgtttcttcgtaatctaaggaatgaatcagtagacaggca 1885
Query: 573 cagaaaaacgctgcaaaaaacctaaagaacggccacaattattgaaatgaaattaaaact 632
|||| | |||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1884 caganacgggctgcanaaaacctaaggaacggccacaattattgaaatgaaattaaacct 1825
Query: 633 tagatgtctatcggcctaaattgagtgacataaatgccctttgatttaggtttaagg 689
|||||||||||||| ||||| |||||||||| |||| ||||||||||| ||||||||
Sbjct: 1824 tagatgtctatcgg-ctaaaatgagtgacat-aatg-cctttgatttaagtttaagg 1771
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6713
Number of Sequences: 1807
Number of extensions: 6713
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)