BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE09FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig226 894 0.0
>3x_Contig226
Length = 1863
Score = 894 bits (451), Expect = 0.0
Identities = 503/517 (97%), Gaps = 3/517 (0%)
Strand = Plus / Plus
Query: 87 atttgtctatcttgatggacagaaagactaagaagccattgatcatttgctctagtgaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atttgtctatcttgatggacagaaagactaagaagccattgatcatttgctctagtgaag 589
Query: 147 gtggtatgaatatcgaagatgtggcaaagaccaacccagatgctatcaagaagttctacg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtggtatgaatatcgaagatgtggcaaagaccaacccagatgctatcaagaagttctacg 649
Query: 207 tcgaagattccgttggattgaccccagaaactgctgctgagattgctgcctccttgggtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcgaagattccgttggattgaccccagaaactgctgctgagattgctgcctccttgggtt 709
Query: 267 tctccaaggaagccgaagctgatgctaaggatgcagtcttgaagttatataagatcttca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tctccaaggaagccgaagctgatgctaaggatgcagtcttgaagttatataagatcttca 769
Query: 327 aggaaaaggatgctactcaaatcgaaattaacccattgagtgaagttcttgaccaggata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aggaaaaggatgctactcaaatcgaaattaacccattgagtgaagttcttgaccaggata 829
Query: 387 agaaggtcatgtgtatggatgccaagttcggtttcgatgacaatgcctccttcagacaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agaaggtcatgtgtatggatgccaagttcggtttcgatgacaatgcctccttcagacaaa 889
Query: 447 aagacgtgtactcatggagagatttgactcaagaagatccagatgaagttaccgnncaga 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 890 aagacgtgtactcatggagagatttgactcaagaagatccagatgaagttaccgccaaga 949
Query: 507 agagtgacttgaactttgtcaag-taaaaggtaatattcgttgtttggtcaacggtggcc 565
||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||
Sbjct: 950 agagtgacttgaactttgtcaagttaaagggtaatatcggttgtttggtcaacggt-gcc 1008
Query: 566 gttttagcc-ttgccaccatggattgtattaagttat 601
| ||||||| | |||||||||||| ||||||||||
Sbjct: 1009 ggtttagccatggccaccatggatgtcattaagttat 1045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6701
Number of Sequences: 1807
Number of extensions: 6701
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)