BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE10FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 486 e-137
>3x_Contig1059
Length = 3822
Score = 486 bits (245), Expect = e-137
Identities = 265/269 (98%), Gaps = 2/269 (0%)
Strand = Plus / Minus
Query: 87 ttctaatttgatagatcaaggtatcgacgctttggttgtaattggtggtgacggttcact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 ttctaatttgatagatcaaggtatcgacgctttggttgtaattggtggtgacggttcact 2737
Query: 147 aactggtgcagacttgttcagatccgaatggccatctctagttgaagaactagtgaagga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 aactggtgcagacttgttcagatccgaatggccatctctagttgaagaactagtgaagga 2677
Query: 207 cggtaagtttactgaggacgaagttgctctataccaaaacttaaccattgttggtatggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 cggtaagtttactgaggacgaagttgctctataccaaaacttaaccattgttggtatggt 2617
Query: 267 cggctccatcgataacgatatgtcttggtactgattctaccattggtgcttactttgctt 326
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 2616 cggctccatcgataacgatatgtc-tggtactgattctaccattggtgcttactctgctt 2558
Query: 327 tggaaagaat-tgtgaaatggttgattac 354
|||||||||| ||||| ||||||||||||
Sbjct: 2557 tggaaagaatctgtgagatggttgattac 2529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,811
Number of Sequences: 1807
Number of extensions: 16811
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)