BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE10RM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1092 0.0
>3x_Contig1801
Length = 57606
Score = 1092 bits (551), Expect = 0.0
Identities = 622/639 (97%), Gaps = 5/639 (0%)
Strand = Plus / Minus
Query: 49 tatattctaagattcaaaatctagaaactttgaatgcgaaattagaagcagacattgaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46251 tatattctaagattcaaaatctagaaactttgaatgcgaaattagaagcagacattgaga 46192
Query: 109 aggtcgaagatgtaacgaaccaattctccgatacacaatcaatgatgtcaggggcaacaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46191 aggtcgaagatgtaacgaaccaattctccgatacacaatcaatgatgtcaggggcaacaa 46132
Query: 169 ggcaaataagtaatagacatgccactaacgaaaaactatctcctacaagctcaatcattg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46131 ggcaaataagtaatagacatgccactaacgaaaaactatctcctacaagctcaatcattg 46072
Query: 229 gaataccagaagaaaaagaactagataccttctccggcaattttaacggctctccatcta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46071 gaataccagaagaaaaagaactagataccttctccggcaattttaacggctctccatcta 46012
Query: 289 tcctaccaattgtcaccaaacagagagacagattccgctcaagaaatctagagcttgaaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46011 tcctaccaattgtcaccaaacagagagacagattccgctcaagaaatctagagcttgaaa 45952
Query: 349 ggcaaataaagcattgtaaccaagaacagacgaaacttaaggtacaagtgaaggaattaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45951 ggcaaataaagcattgtaaccaagaacagacgaaacttaaggtacaagtgaaggaattaa 45892
Query: 409 aggccgataattccaaattgtacgagaaggcaaagctactaagttcgtattcgaacaatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45891 aggccgataattccaaattgtacgagaaggcaaagctactaagttcgtattcgaacaatt 45832
Query: 469 ccgcagtgcgcaatacagtagatttggaatctccattttccgaagaatatgaggagtcat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45831 ccgcagtgcgcaatacagtagatttggaatctccattttccgaagaatatgaggagtcat 45772
Query: 529 tacatccattatctagttttaaagaaagagagcttgaaagatacgaacgaattaagatgc 588
||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct: 45771 tacatccattatctagtttcaaagaaagagagctagaaagatacgaacgacgtaagatgc 45712
Query: 589 cacccttgg-aagactattcttgag-tttgcaaaaattatttta-cgaaacaacaga-aa 644
||||||||| ||||||||||||||| ||||||||| ||||| || |||| |||||| ||
Sbjct: 45711 cacccttggaaagactattcttgagttttgcaaaagttattctagcgaacaaacagacaa 45652
Query: 645 gaaagctattcaggttg-aatgccttggaatacatggat 682
||| |||||||| |||| | ||||||||| |||||||||
Sbjct: 45651 gaatgctattcatgttgtattgccttggattacatggat 45613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6892
Number of Sequences: 1807
Number of extensions: 6892
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)