BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZE11FM1.SCF screened BAC_end (926 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig868 507 e-143 >3x_Contig868 Length = 3693 Score = 507 bits (256), Expect = e-143 Identities = 329/347 (94%), Gaps = 5/347 (1%) Strand = Plus / Plus Query: 233 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69 Query: 293 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129 Query: 353 ctttcgtgctgagttttccacacttatttcggtcagtaatgtaaattgttcgtttacacc 412 |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| | Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaaca-c 188 Query: 413 catgc-aattgttttattccttcaaatttcattat-acttttttcgtttgtttaaacttg 470 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 189 catgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttg 248 Query: 471 ncaaaaatttcatcc-aaagatgactttatgggtcacgtgaacacatatcatttcgttaa 529 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 249 tcaaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaa 308 Query: 530 taattgataacgggttttcttattgtaacaatttgcaacaggatcaa 576 |||| || ||| |||||| |||| ||||||||||| ||||||||| Sbjct: 309 taatgattagcggtttttctcattg-aacaatttgcagcaggatcaa 354 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,262 Number of Sequences: 1807 Number of extensions: 10262 Number of successful extensions: 92 Number of sequences better than 1.0e-20: 1 length of query: 926 length of database: 10,358,551 effective HSP length: 16 effective length of query: 910 effective length of database: 10,329,639 effective search space: 9399971490 effective search space used: 9399971490 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)