BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZE11FM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig868                                                          507   e-143

>3x_Contig868 
          Length = 3693

 Score =  507 bits (256), Expect = e-143
 Identities = 329/347 (94%), Gaps = 5/347 (1%)
 Strand = Plus / Plus

                                                                       
Query: 233 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69

                                                                       
Query: 293 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129

                                                                       
Query: 353 ctttcgtgctgagttttccacacttatttcggtcagtaatgtaaattgttcgtttacacc 412
           |||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||| |
Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaaca-c 188

                                                                       
Query: 413 catgc-aattgttttattccttcaaatttcattat-acttttttcgtttgtttaaacttg 470
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 189 catgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttg 248

                                                                       
Query: 471 ncaaaaatttcatcc-aaagatgactttatgggtcacgtgaacacatatcatttcgttaa 529
            |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 249 tcaaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaa 308

                                                          
Query: 530 taattgataacgggttttcttattgtaacaatttgcaacaggatcaa 576
           ||||   || ||| |||||| |||| ||||||||||| |||||||||
Sbjct: 309 taatgattagcggtttttctcattg-aacaatttgcagcaggatcaa 354


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,262
Number of Sequences: 1807
Number of extensions: 10262
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)