BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1221 0.0
>3x_Contig1507
Length = 11359
Score = 1221 bits (616), Expect = 0.0
Identities = 712/738 (96%), Gaps = 5/738 (0%)
Strand = Plus / Minus
Query: 50 gtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttccaaaat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10017 gtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttccaaaat 9958
Query: 110 cgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgactacctg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9957 cgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgactacctg 9898
Query: 170 attttctgtaaataccttcggccatcatatattcagggtctgattcgatatagttgatgc 229
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9897 attttctgtaaatac-ttcggccatcatatattcagggtctgattcgatatagttgatgc 9839
Query: 230 atgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaaccagggatg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9838 atgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaaccagggatg 9779
Query: 290 atccatagagagtttgtccatcagaactggaagatgataaactgttccttggaacagagt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9778 atccatagagagtttgtccatcagaactggaagatgataaactgttccttggaacagagt 9719
Query: 350 cattcgacgcggaatagggaattgggaaaagtttcaggtcatcaaattcatttggattct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9718 cattcgacgcggaatagggaattgggaaaagtttcaggtcatcaaattcatttggattct 9659
Query: 410 gtagcattggagcactaatttctatggatttggaagaatttggattgacctgtcttacat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9658 gtagcattggagcactaatttctatggatttggaagaatttggattgacctgtcttacat 9599
Query: 470 tagtattcccacttccgaaaagtttccaaaatcgaggttttgcaatactgctattggatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9598 tagtattcccacttccgaaaagtttccaaaatcgaggttttgcaatactgctattggatg 9539
Query: 530 tagaagggagttggtttctagtanggcttagagcattattgcttccgttgaaatccacct 589
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 9538 tagaagggagttggtttctagtagggcttagagcattattgcttccgttgaaatccacct 9479
Query: 590 cgtatgcgtcgncagttaatgattcttgtgatgtcgtcgttaaattgagattccgttttt 649
||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 9478 cgtatgcgtcgtcagttaatgattcttgtgatgtcgtcgttaatttgagatcccgttttt 9419
Query: 650 caattc-aagggctttcggttctgacctc-aagtcttctttggaatctttaattttttaa 707
|||||| |||||||| | ||||||| || |||||| |||| |||||||| ||||| ||
Sbjct: 9418 caattcgaagggcttcggtttctgacgtcaaagtctcttttgtaatctttagtttttcaa 9359
Query: 708 tgtcaccagttaattgaacctttgtcagttgggaattccttgaccttcatattaaatttt 767
||||| ||||||||||| |||| ||||||| | ||||||||||||| |||||| || |||
Sbjct: 9358 tgtcagcagttaattgagccttcgtcagtt-gtaattccttgacctccatatt-aagttt 9301
Query: 768 ccttaatggcaaactgat 785
|||||| ||||||||||
Sbjct: 9300 ccttaactgcaaactgat 9283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8059
Number of Sequences: 1807
Number of extensions: 8059
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)