BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZE12FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 630 e-180
>3x_Contig1712
Length = 23668
Score = 630 bits (318), Expect = e-180
Identities = 471/505 (93%), Gaps = 17/505 (3%)
Strand = Plus / Plus
Query: 87 tgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgatgatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11492 tgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgatgatc 11551
Query: 147 aaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaacaacgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11552 aaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaacaacgg 11611
Query: 207 tcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgggtat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11612 tcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgggtat 11671
Query: 267 tcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttgnanncagta 326
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 11672 tcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaacaagta 11731
Query: 327 gatgaaacagaagcannacatctaccatggaaagctttcttgaaag-aaggacagccaat 385
|||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11732 gatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagccaat 11791
Query: 386 tgcggtgaaacctgaag-agtgttttccataacggagctgttttctttcttcanagaaag 444
||||||| |||||| || ||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 11792 tgcggtg-aacctggagaagtgttttccataacggagctgttttc-ttcttcagag-aag 11848
Query: 445 tcattaccgtgaccacctnttttgtagttggacggttagtaacatgaaaaaacggccttg 504
||| |||||||||||||| ||||||||| ||||| |||| ||||| ||| ||||||||
Sbjct: 11849 tcaataccgtgaccacctc-tttgtagtt-gacgg-tagt-acatg--aaagcggccttg 11902
Query: 505 aatgccaaattcattggcatcggcaccagaaaggacggaaaccaaattttatttttgacc 564
|||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||| |
Sbjct: 11903 aatgcc-aattcattggcatcggcaccagaaagaccgg--accaaatttta-ttttga-c 11957
Query: 565 ccttgggagcaaattttcaataatt 589
|||| |||||||| |||||||||||
Sbjct: 11958 cctttggagcaaa-tttcaataatt 11981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8196
Number of Sequences: 1807
Number of extensions: 8196
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)