BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF01FM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1097 959 0.0
>3x_Contig1097
Length = 4271
Score = 959 bits (484), Expect = 0.0
Identities = 550/564 (97%), Gaps = 6/564 (1%)
Strand = Plus / Minus
Query: 87 ttgttgatgcaacaccgatttctggaccagcattgatgtggacaccgcagtgagtacttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2412 ttgttgatgcaacaccgatttctggaccagcattgatgtggacaccgcagtgagtacttc 2353
Query: 147 tagaaatggaagaaccaacactgttcacgatacccaaggtcaatgcacctctttccaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 tagaaatggaagaaccaacactgttcacgatacccaaggtcaatgcacctctttccaaac 2293
Query: 207 agtaattcaaggacaacatggtgtcagcagtttcaccggattgggaaacaaaaatacaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2292 agtaattcaaggacaacatggtgtcagcagtttcaccggattgggaaacaaaaatacaaa 2233
Query: 267 catcgtctctaaagattgggcattttctatccaagaaatctgacgctaattccactgata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2232 catcgtctctaaagattgggcattttctatccaagaaatctgacgctaattccactgata 2173
Query: 327 ctggaatctccgttagctcttcgaaaatggctcttgtagctaaacaagagtgataagaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172 ctggaatctccgttagctcttcgaaaatggctcttgtagctaaacaagagtgataagaag 2113
Query: 387 taccacaggcgatcattattaatctacgagctttcctgatggcagacaatctagacttta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2112 taccacaggcgatcattattaatctacgagctttcctgatggcagacaatctagacttta 2053
Query: 447 gaccacccaagttgaccagattgtgttcaaaatctattctacctctcatggtgttcaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2052 gaccacccaagttgaccagattgtgttcaaaatctattctacctctcatggtgttcaaag 1993
Query: 507 tagattctgggttgtcataaa-ttccttttgcatgaaa-gttggtatggacccttcatta 564
|||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct: 1992 tagattctggttgttcataaatttccttttgcatgaaatgttggtatggacccttcataa 1933
Query: 565 tttgagcc-attccatct-aagggtttgaatggatctggtgccaaattttg-caattttt 621
|||||||| ||||||||| |||||||||||||||||||||| || ||| || ||||||||
Sbjct: 1932 tttgagccaattccatctcaagggtttgaatggatctggtggcagattctgtcaattttt 1873
Query: 622 tg-tagctttatggatgtgcaatt 644
|| ||||| |||||||||||||||
Sbjct: 1872 tgttagctctatggatgtgcaatt 1849
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,954
Number of Sequences: 1807
Number of extensions: 13954
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)