BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF01RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1314 1304 0.0
>3x_Contig1314
Length = 6289
Score = 1304 bits (658), Expect = 0.0
Identities = 709/722 (98%), Gaps = 3/722 (0%)
Strand = Plus / Plus
Query: 50 tcgagtatttggcttcttttattgaagagttgaattgggctgctctgcatttcaatgtga 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 tcgagtatttggcttcttttattgaagagttgaattgggctgctctgcatttcaatgtga 3337
Query: 110 tggaatggatgaattttttcttcaaaagtgaggtgtaatgagaattcgctgttgcgtaac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 tggaatggatgaattttttcttcaaaagtgaggtgtaatgagaattcgctgttgcgtaac 3397
Query: 170 tttccgattttagtttccattgagaaaagtaaaagcgcacaatctttgtgttctgttgaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 tttccgattttagtttccattgagaaaagtaaaagcgcacaatctttgtgttctgttgaa 3457
Query: 230 cgacgtaatcatgactattagttctttcttcgaagcgtttttgccatacatataaaacat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 cgacgtaatcatgactattagttctttcttcgaagcgtttttgccatacatataaaacat 3517
Query: 290 atcgttgcagagattcagtgttgcactcttgtaccttcgactcgacattaaccaatttat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 atcgttgcagagattcagtgttgcactcttgtaccttcgactcgacattaaccaatttat 3577
Query: 350 ctgctagtaaaatcatttcaaaaaaccttcgtttgatgaatatattacttttttctatga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 ctgctagtaaaatcatttcaaaaaaccttcgtttgatgaatatattacttttttctatga 3637
Query: 410 gtttcagctcgtatgcctctttcttttgatattgcgagatccatttattcaaaaacggac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 gtttcagctcgtatgcctctttcttttgatattgcgagatccatttattcaaaaacggac 3697
Query: 470 ttagatgaaagtttcgttctgagaaagtcgcgagttctcttaggtatatttcatgtgcat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 ttagatgaaagtttcgttctgagaaagtcgcgagttctcttaggtatatttcatgtgcat 3757
Query: 530 acttctttttccattctgtgaagcctttgcaaagtaagtatcgtttcattgtcgttggat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 acttctttttccattctgtgaagcctttgcaaagtaagtatcgtttcattgtcgttggat 3817
Query: 590 tataatgaccttcacacatttttagcttccacaacttgaacgatttctgaaggagatggc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 tataatgaccttcacacatttttagcttccacaacttgaacgatttctgaaggagatgct 3877
Query: 650 tttgattgacattttttcgttctgttggagcattgcgtttaccctctcgtgtttcgcttt 709
||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| ||
Sbjct: 3878 tttgattgaca-tttttcgttctgttgaagcattgcg-ttaacctctcgtgtttcgc-tt 3934
Query: 710 ttatgtttgcaaaggtattaatccaggaaaagttatcaacaatctgcgattttgtattta 769
|||||||||||||||||||| | || ||||||||||| |||||||||||||||||| ||
Sbjct: 3935 ttatgtttgcaaaggtattatccaagaaaaagttatcagcaatctgcgattttgtatcta 3994
Query: 770 tt 771
||
Sbjct: 3995 tt 3996
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7469
Number of Sequences: 1807
Number of extensions: 7469
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)