BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZF02FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 985 0.0
>3x_Contig846
Length = 2695
Score = 985 bits (497), Expect = 0.0
Identities = 603/632 (95%), Gaps = 6/632 (0%)
Strand = Plus / Plus
Query: 86 ctgcgatggaaacacgcttacgttcaccaccagagacacctctcacgaaatcatcaccaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctgcgatggaaacacgcttacgttcaccaccagagacacctctcacgaaatcatcaccaa 707
Query: 146 ctttagtgttataagtgtgcttcaaaccgaaaattgttgcatataagtctctgatgaatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctttagtgttataagtgtgcttcaaaccgaaaattgttgcatataagtctctgatgaatt 767
Query: 206 cgatatactgttgtctggtaaaatcgttaattcttttgcttggagtcttacaagcgacag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgatatactgttgtctggtaaaatcgttaattcttttgcttggagtcttacaagcgacag 827
Query: 266 caaaatctaaagtctgttgcacagtcaaatgcgggaaaatggacatccatttcaccgttg 325
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 828 caaaatctaaagtctgttgcacagtcaaatgcggg-aaatggacatccatttcaccgttg 886
Query: 326 tatataacatccgacttgaaatacttcaacatatccttttgtgagacaccgtcgtacgag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tatataacatccgacttgaaatacttcaacatatccttttgtgagacaccgtcgtacgag 946
Query: 386 atgtcacctgagacacccttgaaatgagatagctcaccagccattgttttttaagaaagt 445
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 947 atgtcacctgagacacccttgaaatgagatagctcaccagccattg-tttttaagaaagt 1005
Query: 446 ggaacaaccagaaactgntctaccncatacaaagcacatctcaccangcctaacaagtag 505
||||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||||
Sbjct: 1006 ggaacaaccagaacctggtctacccaatacaagcaacatctcaccaggcctaacaagtag 1065
Query: 506 atntacattgctaatgatatctctcaatgttgtttgtctggccttcttaaattccttg-a 564
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct: 1066 atttacattgctaatgatatctctcaatgttgtttgtctggccttcttaattcccttgaa 1125
Query: 565 tatagttgcagggtacattagcatattaccgtaagtggcacctttcaagaaactgaacgt 624
|||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct: 1126 tatagttgcaggtaacattagcatatcaccgtaagtggcacc-ttcaagaaactgagcgt 1184
Query: 625 taacaccctttacagcaacgtttcttgcggtgataccggccttnctcaaatggat-ccaa 683
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||
Sbjct: 1185 caacaccctttacagcaacgtgtctggcggtgataccggccttcctcaaatggataccac 1244
Query: 684 cattcgtggacgcccttaaggatcccctggat 715
||| |||||| |||||||||||||||||||
Sbjct: 1245 catcgttggacg-ccttaaggatcccctggat 1275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6667
Number of Sequences: 1807
Number of extensions: 6667
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)